Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04956 ATGTCTCATCCAACAACTCCAAAGCATCAGAGACAGAGTTATGCAGATGATTTAGTTAAGCATCATCAACGATTTGGCGGCAAAGTGGATGCGTGGAAGGCTGCTCTAACCCAGGTAGCTGGACTCTCAGGCTGGGATTCACATGTAACAAGACTTGAAAGCACACTTGTTACAGAGATTGTGAAAGACATTGCGAAAAAATTGAAATGTTGTGTCTCAAGTGATTATGAAGGAATGACAGGAATTGACAACCATATTGAAAATAGGTGCCTTATATCTATTTCAGAAGGTGAAGTTTGGATGCATGATCTAATACGAGATATGGGGCGTCAAATTGTTATGCTTCAATGTGTTGATAATCCTGGAAAACGTAGTCGATTATGGAAGGCTAGTGAAATTGACGATGTTTTAAGCAAGGGAAAGGGAACAGATGCAATCCGGTGTATATTCCTAAACATGGATGAAATATGGGAAAAGAAAGTTCAACTACATGTTGATACATTTAAGAAAATGCATAATCTTAGAATGATCAAGTTCCACAATCCCTTTACGATAAATAAGTCAAATGTAACCTTTCATGGATTCCTGAAGAGTTTTCCTAATGATTTAAAATTTCTTCAATGGGATGGCTACCCTCAAAGATCCTTGCCACAAGACTTTTGCCCAGAAAATCTTGTTACACTTGATATGTCTTATAGCCATCTTGAACAATTTTGGAAGGGGGATCAGGCTTTACCAAGTTTGAAAAGGCTTGACCTTAGTTATTCTAAGAAGCTGATAGCAGTTCCAGACCTCTCTTTCACTCCAAATATTGAAGAAGTAATTCTTAGTGGTTGTGTAAGTTTGACACAAGTTTACTCCTCTGGCTTCCTCAACAATCTTAACTTCTTACTTTTAGAAGGTTGTACCGAACTCAAGAGTTTAAATATTCGTAGCAATATTCTATCAAGATCATCTGGATTAGTTGCTCTCCGTGATTGTCATAAACTTGAAACACTTTTAATCAGCAGTAGAATTGATCATGTGGTTCAATCATATAAAAAATTTTATGGATATTCTAAGGTCGGAGATATGCACAAACTTTGTGATGAAATGGAAATAAAAATAGAGTTGAATGATGAAGGGGATTACGAGATTTGTGGATCATTTTCAGATACTCTTTCAGGAAAAAGAATCAATGATTTTTGTTGGTTAGATATTTCCAAATGTGAGTCCCTATCATGCCTACCAGCTGAACTTTTAAATTTGAAGTTTCTAACAGGACTTTCTCTTCATGGTTGTTTAAATTTGGAGTTACCTGAAATCAAGGAGACTATGGAAAATTTAAAAGTGCTCATCTTAGACGAAACATCAATAAAAGAACTACCTTCATCCTTGTACAATTTAGTTGGGCTTGAAAAATTGAGCTTGCAAAGTTGCACAAAGCTTAAGACTATTCCATCTTCCATTGGAAACTTCGGTAAACTCCTCAAGTTAAACCTTACCTATTGTGAATCACTTGAAACTTTTCCGAGCAGCATTTTCAAATTGAAGTTGGCAAAACTCAATTTAGAAGGTTGCTCGATGCTTGCGACCTTTCCAGAGATCTTGGAGCCTGCAGAAAGTTTTACTTGCATTGACTTAACAGACACAGCAATAAAAGAACTACCTTCATCCCTGCACCATTTGGTCGGGCTTAAAGAATTAAGCTTGCAAAGTTGCACAAAGCTTAAGACTATTCCTTCTTCTATTGGAAACCTCAGTAAACTCCTCAAGTTAAAACTTGCCTACTGTGAGTCACTTGAAACTTTTCCGAGCAGCATTTTCAAATTGAAGTTGACAAAACTTGATTTCCAGGGTTGCTCAATGTTCAGGACCTTTCCTGAAATACCAAATGACATTGGCCGCTTGTCATCCTTGACTGAACTTTCATTGAAAGGAAGTAGTATTGTGAACCTTCCTGAGAGTCTGGCTCATCTATCAAGTTTGAAATCACTTAATTTAAGTGATTGCAAATTGCTTGAATCTGTACCAAAGCTTCCACCAAATCTAAAGAAAGTTTTTGCATTTGATTGCCCTTCCATTAAGAGAATGGTGCTAAATTCAAGGTCTGATTATGAAGAAGATACCTTCAAATTTCATCTGACCAATAGTCAAGAACTAGATGCTACTTCTTTGAGGAATATTGAAGAGGAAGCATATATTAAGATCAACGATGATGCATATAGGTCAGTGATCTTCTGTTTTCCAGGAAGTGCTGTTCCTGATTGGTTCCCTCACCGTTGCCAGGGACATTCAATAACTATAAGAAACGATGATTTAAATTTGTACGAGAGAAACAGGCTTATTGGTTTCGCTCTATGTGTGGTTTTGGGAGATGATTTTCCATACAAATTCTTTTGTCTCAATCCCAGAGTACCGTATTACTATGGTGTTGGCTTTAGATACAAATTAAAATTTGAATCTGATGGTCAAACATACTTTCATCCCGACAACAAGCTTGAAGTTGAATATTATGATTGGAAAGATCGATATAGAATATTTGCCCAACATCACACATTCCTGTGGAAGTATGAATTGGACTTGCCAAGAATTGATGTCGAGACTATGACTTTTGAGATCGTAGATGAGCATCATCGTCCCTTAAGTTTTCCAACAACCATGACAGTGAAAGAATGTGGAATATGTCCTTTGTATAGCAAAGAAAATGATGATGGTGATGATGATGGTGGTGGTGACAGCATTAATGAAGAACCAAGTAGGGATGCAGTGTGTTTGCTGGATCTCTTCCCAAGTGGGGATGTAGTGTGTTCGGTGTACGGAACACACCATATGTACCCCTCCTCAAGTGACAACTACACACAAAATAAAAGAAGAAAAAAATAA 2865 0.371 MSHPTTPKHQRQSYADDLVKHHQRFGGKVDAWKAALTQVAGLSGWDSHVTRLESTLVTEIVKDIAKKLKCCVSSDYEGMTGIDNHIENRCLISISEGEVWMHDLIRDMGRQIVMLQCVDNPGKRSRLWKASEIDDVLSKGKGTDAIRCIFLNMDEIWEKKVQLHVDTFKKMHNLRMIKFHNPFTINKSNVTFHGFLKSFPNDLKFLQWDGYPQRSLPQDFCPENLVTLDMSYSHLEQFWKGDQALPSLKRLDLSYSKKLIAVPDLSFTPNIEEVILSGCVSLTQVYSSGFLNNLNFLLLEGCTELKSLNIRSNILSRSSGLVALRDCHKLETLLISSRIDHVVQSYKKFYGYSKVGDMHKLCDEMEIKIELNDEGDYEICGSFSDTLSGKRINDFCWLDISKCESLSCLPAELLNLKFLTGLSLHGCLNLELPEIKETMENLKVLILDETSIKELPSSLYNLVGLEKLSLQSCTKLKTIPSSIGNFGKLLKLNLTYCESLETFPSSIFKLKLAKLNLEGCSMLATFPEILEPAESFTCIDLTDTAIKELPSSLHHLVGLKELSLQSCTKLKTIPSSIGNLSKLLKLKLAYCESLETFPSSIFKLKLTKLDFQGCSMFRTFPEIPNDIGRLSSLTELSLKGSSIVNLPESLAHLSSLKSLNLSDCKLLESVPKLPPNLKKVFAFDCPSIKRMVLNSRSDYEEDTFKFHLTNSQELDATSLRNIEEEAYIKINDDAYRSVIFCFPGSAVPDWFPHRCQGHSITIRNDDLNLYERNRLIGFALCVVLGDDFPYKFFCLNPRVPYYYGVGFRYKLKFESDGQTYFHPDNKLEVEYYDWKDRYRIFAQHHTFLWKYELDLPRIDVETMTFEIVDEHHRPLSFPTTMTVKECGICPLYSKENDDGDDDGGGDSINEEPSRDAVCLLDLFPSGDVVCSVYGTHHMYPSSSDNYTQNKRRKK 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04956 954 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 354 575 IPR044974 GO:0006952
Trre8g04956 954 Pfam C-JID domain 742 895 IPR045344 -
Trre8g04956 954 SUPERFAMILY L domain-like 392 695 - -
Trre8g04956 954 Gene3D Ribonuclease Inhibitor 360 533 IPR032675 -
Trre8g04956 954 Gene3D Ribonuclease Inhibitor 145 359 IPR032675 -
Trre8g04956 954 Gene3D - 2 73 IPR035897 -
Trre8g04956 954 SUPERFAMILY L domain-like 180 482 - -
Trre8g04956 954 Gene3D Ribonuclease Inhibitor 534 732 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04956 Trre-Chr8 52503942 52509567 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04956 579 710 WRKY Transcription Factor Family AT4G12020 31.655 1.20e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04956 - - tpra:123916959 1155.2