LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g04954	ATGTCTGATCTAAAGTATGATGTGTTCCTCAGCTTTAGAGGAGAAGATACTCGTGACAACTTCGCGAGTCACCTTTATGCAGAATTGCGTAGGCAAAACATTGAAACATTCATAGATGATAAAAGTCTTGAGAGAGGTGATGAGATTAACTCATCCCTGGTCGAAGCAATTGAAGAATCACTCATTTATGTTGTGATTTTGTCGGAACACTATGCTTCTTCAAGTTGGTGTTTAGATGAACTGACAGAAATACTGAAATCTAAGGAGAGATGTGGAAGGGAAGTGATACCGGTGTTCTATAAGGTGGATCCGTCAACTGTTAGGCATCTGAGACAGACTTATGCAGACGACTTTGTTAAGCATCATCAACGATTTGGTGACAAAGTGGACGCGTGGAAGGCTGCTCTAAACCAAGTAGCTGGACTCTCTGGCTGGGATTCACAAGTAACCAGACCAGAAAGCACACTTGTTACAGAGATTGTGAAAGACATTGTGAAAAAATTGAATCGTTGTGTCTCAAGTGATTATGAAGAAATGACAGGAATTGACAACCATATTGAAAAAATTCAGTCCTTGTTGCTCGTCGAGTCCCCAACTGTTCAAATCATAGGAATATGGGGCATGGGAGGAATAGGCAAAACAACAATTGCCAATGCAATCTTTAAAAAACTTGCAACTCAGTTCCGTTCCGCAAGCATCATTCAAAATGTTAAACAAGAAATAGAAAGAGCTGGACTAGACCATGTAAAAAGCAAATACTTATCAAAACTTTTAGGGGAAGATATTAAATCCTCTGAATTCAATTTTTCAATTGATCCAAGGCTCAAACGGATGAAGGTTCTTCTTGTTTTTGATGATGTGAAAGATTCTGATCAACTTAAATATTTAATCGGAACACATCGTAACTTTGGTCAGGGGAGTAGAATCATTGTGACGAGTAGAGACAAGCATGTGCTTGAGAATGCCAATGCTGATGAAATATATAAAGTTAGTGAAATGGATGATCAAGATTCGCTAGAACTCTTCTGTTCATTTGCCTTTAAACAAAAACAACCGATTGAATCTTATGTGAGCTTAACAGAAAAGTTTTTAAAATATGCTGATGGGCTTCCTTTAGCTCTCAAAGTTTTGGGCTCATTGCTTTATGGAAAAACAAAAGAAGTGTGGGAAAGTCAGCTGCAAAAGCTCGAAAAGCTTCCCAATCAAGATATTTTAAAAAAGTTGAAGTTAAGTTATGATGGACTTGACGTCGAAGAAAAAGATATATTTCTTGACATAGCTTGTTTCCCTATAGGAAAAATGGAGAGATTTGTAGAACAGAGGTTGGATGGTTGTGGTTATTCTGCTGCTCGCATTGGAATGGAAGTTCTCAAAGATAGGTGCCTTATATTTATTTCAGATGGTCGTATTTGGATGCATGATCTAATAAAAGAAATGGGGCAAGCAATTGTTCTCCTTGAAGACGATCCTAGAAAGCGTAGTCGATTATGGAATACTAATGATATTTATGATGTTTTAAGTAAGAAGAAGGGAAAGGGAACAGATGCAATCAAGGGTATATTTCTAGACATGATGGAAATAAAGAAAATACAACTAGATGCTGATACATTCAATGAAATGCATAATCTTAGAATGATCAAGTTCTTCCGTAGTGGCAGCGATGAGTCAAATGTGACCTGTTCGGATCATTTAAAATTTCCGAATAATTTAAAACTTCTATATTGGGATCACTTCCCTCTAAGATCATTGCCGCAAAACTTTTGGCCAGAAGATCTCATTATGGTTGAAATGCGTGACAGCCATCTTGAACAACTTTGGGAGGGAGATCTGGCTTTACCAAATTTGAAAATACTTGACCTTTCGTATTCTGAGAAGCTGAGAGCAGTACCAGACCTCTCTTTGTGTCCAAATATTGAAGAAATAAAGCTTTATCATTGTGAAAATTTCACTACAAAAAAACACACTATTTAG	1971	0.3719	MSDLKYDVFLSFRGEDTRDNFASHLYAELRRQNIETFIDDKSLERGDEINSSLVEAIEESLIYVVILSEHYASSSWCLDELTEILKSKERCGREVIPVFYKVDPSTVRHLRQTYADDFVKHHQRFGDKVDAWKAALNQVAGLSGWDSQVTRPESTLVTEIVKDIVKKLNRCVSSDYEEMTGIDNHIEKIQSLLLVESPTVQIIGIWGMGGIGKTTIANAIFKKLATQFRSASIIQNVKQEIERAGLDHVKSKYLSKLLGEDIKSSEFNFSIDPRLKRMKVLLVFDDVKDSDQLKYLIGTHRNFGQGSRIIVTSRDKHVLENANADEIYKVSEMDDQDSLELFCSFAFKQKQPIESYVSLTEKFLKYADGLPLALKVLGSLLYGKTKEVWESQLQKLEKLPNQDILKKLKLSYDGLDVEEKDIFLDIACFPIGKMERFVEQRLDGCGYSAARIGMEVLKDRCLIFISDGRIWMHDLIKEMGQAIVLLEDDPRKRSRLWNTNDIYDVLSKKKGKGTDAIKGIFLDMMEIKKIQLDADTFNEMHNLRMIKFFRSGSDESNVTCSDHLKFPNNLKLLYWDHFPLRSLPQNFWPEDLIMVEMRDSHLEQLWEGDLALPNLKILDLSYSEKLRAVPDLSLCPNIEEIKLYHCENFTTKKHTI	656

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g04954	656	Gene3D	-	169	330	IPR027417	-
	Trre8g04954	656	Gene3D	-	332	416	IPR042197	-
	Trre8g04954	656	FunFam	Disease resistance protein (TIR-NBS-LRR class)	2	170	-	-
	Trre8g04954	656	SUPERFAMILY	Toll/Interleukin receptor TIR domain	3	145	IPR035897	-
	Trre8g04954	656	SMART	till_3	5	142	IPR000157	GO:0007165
	Trre8g04954	656	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	6	649	IPR044974	GO:0006952
	Trre8g04954	656	PRINTS	Disease resistance protein signature	367	381	-	-
	Trre8g04954	656	PRINTS	Disease resistance protein signature	274	288	-	-
	Trre8g04954	656	PRINTS	Disease resistance protein signature	610	626	-	-
	Trre8g04954	656	PRINTS	Disease resistance protein signature	202	217	-	-
	Trre8g04954	656	Pfam	TIR domain	5	181	IPR000157	GO:0007165
	Trre8g04954	656	Pfam	NB-ARC domain	183	402	IPR002182	GO:0043531
	Trre8g04954	656	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	172	426	IPR027417	-
	Trre8g04954	656	SUPERFAMILY	L domain-like	521	650	-	-
	Trre8g04954	656	FunFam	Disease resistance protein (TIR-NBS-LRR class)	334	416	-	-
	Trre8g04954	656	SUPERFAMILY	"Winged helix" DNA-binding domain	403	506	IPR036390	-
	Trre8g04954	656	Gene3D	Ribonuclease Inhibitor	494	655	IPR032675	-
	Trre8g04954	656	Gene3D	-	2	168	IPR035897	-
	Trre8g04954	656	ProSiteProfiles	TIR domain profile.	4	168	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g04954	Trre-Chr8	52493403	52496984	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g04954	6	646	WRKY Transcription Factor Family	AT4G12020	34.436	8.92e-95	318

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g04954	-		-	tpra:123916959	916.376