Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04953 ATGCGATTCCTCTCCCACTCCACAATCATCTCCGCCTCACCAACGGCGCCACCACATCCAAACTTAACCACTTCCTCACTGCTCCATGGTTTGAAGAAGATAGAGAAAGAGCGTGTTACAGATCTGAACGGAATAGAGATTAGAGAAGTGGAAGCAAATCTGAAGCAGCATGAAGATTTAGCTCTGCAGGCATCATTATACAAATATGTTCCTAACTCTTATTTTGCAGCTAAGAAAGAGGCTGAAGAATGTAGACAGAAGCTTACAGATTTATTGAACTATGCTAAGTCAATTGCTCGGCTCACACCTAACCTGGAGAAGGAATTTCTTGAGATGCCTACTACAATTGAGGAGTTAGAAGCAGCTATCCAAGATACAACTTCTCAAGCCAATTCAATCCTTTTTGTCTATCGTAACATATTGGAACAATATGAGGATCGTCAAAGACAGATAGAAGATCTTGCAACAAAACTTGATGCAGACAAGAAGGAATCTAGAAGGTTACTAGCAGAATTGGATAACGTTAAGGTCCGGTTGCCGGTGCGTCTAGCTTGGTATCATCTCAGTTGA 570 0.4175 MRFLSHSTIISASPTAPPHPNLTTSSLLHGLKKIEKERVTDLNGIEIREVEANLKQHEDLALQASLYKYVPNSYFAAKKEAEECRQKLTDLLNYAKSIARLTPNLEKEFLEMPTTIEELEAAIQDTTSQANSILFVYRNILEQYEDRQRQIEDLATKLDADKKESRRLLAELDNVKVRLPVRLAWYHLS 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04953 189 Coils Coil 137 171 - -
Trre8g04953 189 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 5 45 178 IPR027131 GO:0000724|GO:0005524|GO:0006281|GO:0016887|GO:0030915
Trre8g04953 189 MobiDBLite consensus disorder prediction 1 20 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04953 Trre-Chr8 52488616 52491871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04953 47 176 Structural Maintenance of Chromosomes family AT5G15920 50.769 4.96e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04953 K22803 - gmx:100778678 181.415