Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04950 ATGGATGTTCTCAAAGATAGGCTTCAATGTGTCGATGATCCTGGAAAACGTAGTCGATTATGGAAGGCTAGTGATATCTACAATGTTTTAAGCAAGAACAAGGGAAAAGGAACTGATGCAATCCGGTGTATATCCCTAAACATGGAGGAAATAAAGAAAGTTCAACTACATGCTGATACATTCAAGAAAATGCATAATCTTAGAATGATCAAGTTCCACACTGACTTCTTTAAAAAAAAAAAAAAGTTCCACACTGACTTGATTGAAGATGGGAATGGCTCAAGTGTGACATTTGATGGGTTTCTTAAGAGTTTTCCTAATGATTTAAAATTTCTTCAATGGGATGGCTACCCTCAAAGATCTTTGCCACAAGACTTTTGCCCAGAAAATCTTGCTACACTTGATATGTCTTTTAGCCATCTTGAAAAACTTTGGGAGGGGGATCAGGTTTTACCAAATTTGAAAAGGCTTGACCTTAGTTATTCTAGTAAGCTGATAGCAGTTCCAGATCTCTCTTTCTCTCCAAATATTGAAGAAGTAATTCTTAGTGGTTGTGTAAGTTTGACACAAGTTTACTCCTCTATCTTCCTCAACAAACTTAACTTCTTATGTTTAGACTATTGTACCAAACTCAAGAGTATAAATATTCCTAGCAATATTCTATCAAGATCATCTGGATTTGTTTCTCTCCGTGATTGTCGTAACCTTGAAACACTTTTAATCAGCAGTAGAATTGATCATGTGGTTCAATCATATAAATTTTTTTGTGGATATTCTATGGTTGAAGAAATGCAAACTTTTTGTGTTGAAATGGGAATAGAAATAGAGTTGAATGATGAAGGGGATTATGAGATTTGCGAATCATTTTCAGATACTCTTTCAGGAAAAAGAATCAATGAGTTTTGTTGGTTAGATGCTTCATATTGTGGGTCCTTAACATGCCTACCAGCTGAACTTTTAAATTTGAAGTTTCTAACAGGACTTTCTCTTAGTCGTTGTTTAAAGTTGGAGGAGTTACCTGAAATCATGGAGATTATGGAAAATTTAAAAGTGCTCAACTTAGACGAAACATCAATAAAAGAACTACCTTCATCCTTGCACCATTTAGTTGGGCTTCAAAAATTGAGCTTGAAAAGTTGCACAAAGCTTAAGACTATTCCATCTTCCATTGGAAACCTCAGTGAACTCCTCAAGTTAAACCTTGCCGGTTGTGCATCACTTGAAACTTTTCCAAGCAGCCTTTTCAAATTGAAGTTGACAAAACTCAATTTTAAAGGTTGCTCAATGCTTGCGACCTTTCCAGAGATCTTGGAACGTGCAGAAAGTTTTACTTGCATTGACTTAACAGACACAGCAGTAAAAGAACTACCTTCATCCTTGCACCTTTTGGTCGGGCTTGAAGAATTGTACTTGCAAGGTTGCACAAAGCTTAAGACTATTCCATCTTCCATCAGAAATCTAAGTAAACTCTTATGGTTAGACCTTGACTACTGTAAGTCACTTGAAACTTTTCCAAGCAGCATTTTCAAATTGAATTTGACAGAACTCAATTTTGAAGGTTGCTCAATGCTTCAGACTTTTCCAAAGATTTTAGAGCCTACAGAAAAAAAATTTCACATTAACTTAGCAAACACCGGAATAAAAGAACTACCTTCATCCTTGTGCCGTTTAGTTTGGCTTAAAAAATTGAACCTGAAAAGTTGCACAAAGCTTAAGACTATTCCATCTTCCATTGGAAACCTCAGTAGACTCCTCGAGTTAAACCTTACCTATTGCGCATCACTTGAAACTTTTCCAAGCAGCATTTTCAAATTGAATTTGACAGAACTCAATTTTGAAGGTTGCTCAATGCTTCAGACCTTTCCAAAAATACCAAATGACATTGGCCGCTTGTCATCCTTAACTGAAATTTTACTGCAAGGAAGTAATATTGTGAACCTTCCCAAGAGTATCGCTCTTCTATCAAGTTTGAGATCACTTAATTTAAGTGATTGCAAATTGCTTGAACGTGTTCCAAAGCTTCCACCAAATCTAAACCAAGTTTTGGCATATGATTGCCCTTCCATTAAGAGAATGATGCTAAATTCAAGGTCTGATCCCGGAGAAGGTGCATTCAAATTTCATCTCACCAATAGTCAATATTCAACATCTTTGAGTAATATTGGAGAGGAAGCATGTATTAAGATCACTGATGATGAATATAGGTCAGTGGTCTTCTGTTTTCCAGGGAGTGCAGTTCCTCGCTGGTTCCAATACTGTTGCAAGGGACATTCAGTAACTATGACAAAAGATTCTCCAAATTTGTGCAGTAAAAGTAGGCTAATTGGTTTCGCTCTGTGTGCTGTTTTGAGACCGGAAAATATGGATGAGAGCTTTATATACAAATTTGAATTTATATCAGAGGGTGAAATATACTCTTCTTCCCATTGTTTGCTTAAAAACTATTTGAATTGGAATTGTCCAGATAGATCTCTCAAACAAGATCACACATTCCTGTGGAAGCATGATTTATACCTAGAAGCAATTACCAACAAGCTCTTTCATGCCCAAGACTTCACTTTTGAGTTTCCATCAAAAGGCAAAGAATATGGAATATGTCCTCTGTATACCAAAGAAATTTATACATTGAAGAACCGAGTGGGACCAAAGCTGCAGAATTGTGTAGTATAA 2670 0.3622 MDVLKDRLQCVDDPGKRSRLWKASDIYNVLSKNKGKGTDAIRCISLNMEEIKKVQLHADTFKKMHNLRMIKFHTDFFKKKKKFHTDLIEDGNGSSVTFDGFLKSFPNDLKFLQWDGYPQRSLPQDFCPENLATLDMSFSHLEKLWEGDQVLPNLKRLDLSYSSKLIAVPDLSFSPNIEEVILSGCVSLTQVYSSIFLNKLNFLCLDYCTKLKSINIPSNILSRSSGFVSLRDCRNLETLLISSRIDHVVQSYKFFCGYSMVEEMQTFCVEMGIEIELNDEGDYEICESFSDTLSGKRINEFCWLDASYCGSLTCLPAELLNLKFLTGLSLSRCLKLEELPEIMEIMENLKVLNLDETSIKELPSSLHHLVGLQKLSLKSCTKLKTIPSSIGNLSELLKLNLAGCASLETFPSSLFKLKLTKLNFKGCSMLATFPEILERAESFTCIDLTDTAVKELPSSLHLLVGLEELYLQGCTKLKTIPSSIRNLSKLLWLDLDYCKSLETFPSSIFKLNLTELNFEGCSMLQTFPKILEPTEKKFHINLANTGIKELPSSLCRLVWLKKLNLKSCTKLKTIPSSIGNLSRLLELNLTYCASLETFPSSIFKLNLTELNFEGCSMLQTFPKIPNDIGRLSSLTEILLQGSNIVNLPKSIALLSSLRSLNLSDCKLLERVPKLPPNLNQVLAYDCPSIKRMMLNSRSDPGEGAFKFHLTNSQYSTSLSNIGEEACIKITDDEYRSVVFCFPGSAVPRWFQYCCKGHSVTMTKDSPNLCSKSRLIGFALCAVLRPENMDESFIYKFEFISEGEIYSSSHCLLKNYLNWNCPDRSLKQDHTFLWKHDLYLEAITNKLFHAQDFTFEFPSKGKEYGICPLYTKEIYTLKNRVGPKLQNCVV 889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04950 889 Gene3D Ribonuclease Inhibitor 536 698 IPR032675 -
Trre8g04950 889 SMART LRR_typ_2 393 417 IPR003591 -
Trre8g04950 889 SMART LRR_typ_2 631 653 IPR003591 -
Trre8g04950 889 SMART LRR_typ_2 581 605 IPR003591 -
Trre8g04950 889 SMART LRR_typ_2 346 368 IPR003591 -
Trre8g04950 889 SMART LRR_typ_2 463 486 IPR003591 -
Trre8g04950 889 SMART LRR_typ_2 654 681 IPR003591 -
Trre8g04950 889 SMART LRR_typ_2 151 175 IPR003591 -
Trre8g04950 889 SMART LRR_typ_2 487 511 IPR003591 -
Trre8g04950 889 SUPERFAMILY L domain-like 105 242 - -
Trre8g04950 889 Pfam C-JID domain 741 873 IPR045344 -
Trre8g04950 889 Gene3D Ribonuclease Inhibitor 17 260 IPR032675 -
Trre8g04950 889 Pfam Leucine Rich Repeat 130 149 IPR011713 -
Trre8g04950 889 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 57 303 396 - -
Trre8g04950 889 SUPERFAMILY RNI-like 418 687 - -
Trre8g04950 889 SUPERFAMILY RNI-like 204 450 - -
Trre8g04950 889 Gene3D Ribonuclease Inhibitor 287 535 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04950 Trre-Chr8 52463234 52466609 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04950 486 672 WRKY Transcription Factor Family AT4G12020 34.043 2.94e-11 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04950 - - tpra:123916959 692.96