Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04948 ATGGAAGTTCTCAAAGATAGGTGCCTTATATTTATTTCAGATTATAATGAAGTTTGGATGCATGATCTAATAAAAGAAATGGGGCAAGCAATTGTTCTGCTTGAAGATGATCCTAGAAAGCGTAGTCGATTATGGAAAACTAATGATATTTATGATGTTTTAAGTAAGAAGAAGGGAAAGGGAACAGATGCAATCAAGGGTATATCCCTAAACACAAATGAAATAAAGAAAATACAACTAGATGCTGATACATTCAATGAAATGCATAATCTTAGAATGATCAACTTCCATAGTCGCAACTGGTGGGATGGCTCAAAGTCAAATGTGACCTGTTCGGATGATTTAAAATTTCCGAATAATTTAAAATATCTATATTGGGATAGCTTCCCTCTAAGATCATTGCCGGAAGACTCTTGGCCAGAAGATCTCATTGTGGTTGAAATGCATGATAGCCATCTTGAACAACTTTGGGAGGGAGATCAGGTTTTACCAAATTTGAAAAGGCTTGACCTTAGTTATTCTAGTAAGCTGATAGCACTTCCAGATCTCTCTTTCTCTCCAAATATTGAAGCAGTAAATTTTCGTGGTTGTGTAAGTTTGACACAAGTTAACTCCTCTAGCTTCCTCAACAAACTTAACTTCTTATGTTTAAGAGGTTGTACCGAACTCAAGAGTATAAATATTCCTAGCAATATTCTATCAAGATCATCTGCATATGTTGCTCTCAGTGGTTGTCGTAACCTTGAAACACTTTTAATCAGCAGTAGAATTGATCATGTGATTCAATCATATAAATTTTTTTGTGGATATTCTAAGGTTGAAGAAATGGAAGATTTTTGTGATGAAATGGGAATAGAGTTAGGGTTGAATGATGAAGGGGATTATGAGATTTGGGAATCATTTTCAGACACTCTTTCAGGAAAAAGAATCAATGAGTTTTGTTGGTTAGATGCTTCATATTGTGGGTCCTTAACATGCCTACCAGCTGAACTTTTAAATTTGAAGTTTCTAACAGGACTTTCTCTTCGTGGTTGTTTTAAGTTGGAGGAGTTACCTGAAATCATGGAGACTATGGAAAATTTAAAAGTGCTCGCCTTAAACGGAACATCAATAAAAGAACTACCTTCATCCATGCACCATTTAGTTGGGCTTGAAAAATTGAGCTTGAGAAGTTGCACAAAGCTTAAGACTATTCCATCTTCCATTGGAAATCTCAGTGAACTCCTCGAGTTGGACCTTACCGGTTGTGCATCACTTGAAACTTTTCCAAGCAGCATTTTCAAACTGAAGTTGACAGAACTCAAATTCAAAGGTTGCTCAATGCTTCAGACCTTTCCTGAAATACCAAATGACAGTGTCTGCTTGTCATCCTTGACTGAACTTTCATTGAAAGGAAGTAGTATTGTGAACCTTCCTGAGAGTTTGGCTCATCTATCAAGTTTGAAATCACTTGATTTAAGTGATTGCAAATTGCTTGAATGTGTTCCAAAGCTTCCACCAAATCTAAACCATGTTTTGGCATACGATTGCCCTTCCATTAAGAGAATGATGCTAAATTCAAGGTCTGATTTCGAAAAAGGTACCTTCAAATTTGATCTGACCAACAGTCAAGAACTAGATGCTACTTGTTTGAGTAATATTGAAGAGGAAGCATATATTAAGATCAATGATGATGCATATAAGTCGGTGTTGTTCTGTTTTCCAGGAAGTGCAGTTCCTGATTGGTTCTCTCACCGATGCCAGGGACATTCAATAACTATAAGAAACGATCATTTAAATTTGTACGGGAGAAACAGGTTTATTGGTTTCGCTCTGTGTGTGGTTTTGGGACCTGACTTTCCATACAAATTCTCTTTGTCTCATCCTGGCTTTAGATACGAATTAAAATTTGAATCTGATTGTCAAACACACTTTCATCCCAACAACAAGCTTAAACTTGAATATGGTACGCAAGGTTGTTATAGAAGATTTTTCCCACATACGCAAGATCGATATAGAATATTTGCCCAACATCACACGTTCCTGTGGAAGTATGAATTGGACTTGCCAAGAATTGATGTCGAGACTATGACTTTTGAGATTGTAAATGATGATGATGATGATGGTGGTGGTGGTGGTGGTGACAGCATTAATGAAGAACCAAGTATAAAGGTGAAAGAATGTGGAATATATCCTCTGTATAGCAAAGAAAATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGATGACAACAACATTAATGAAGAACCAAGTAGGGATGCAGTGTGTTTGCTGGACCTCTTCCCAAGTGGGGATGCAGTGTCATCGGTAGACCCCTCCTCAAGTGACAACTACACACAAAATAAAAGAAGAAAAAAATAA 2397 0.3671 MEVLKDRCLIFISDYNEVWMHDLIKEMGQAIVLLEDDPRKRSRLWKTNDIYDVLSKKKGKGTDAIKGISLNTNEIKKIQLDADTFNEMHNLRMINFHSRNWWDGSKSNVTCSDDLKFPNNLKYLYWDSFPLRSLPEDSWPEDLIVVEMHDSHLEQLWEGDQVLPNLKRLDLSYSSKLIALPDLSFSPNIEAVNFRGCVSLTQVNSSSFLNKLNFLCLRGCTELKSINIPSNILSRSSAYVALSGCRNLETLLISSRIDHVIQSYKFFCGYSKVEEMEDFCDEMGIELGLNDEGDYEIWESFSDTLSGKRINEFCWLDASYCGSLTCLPAELLNLKFLTGLSLRGCFKLEELPEIMETMENLKVLALNGTSIKELPSSMHHLVGLEKLSLRSCTKLKTIPSSIGNLSELLELDLTGCASLETFPSSIFKLKLTELKFKGCSMLQTFPEIPNDSVCLSSLTELSLKGSSIVNLPESLAHLSSLKSLDLSDCKLLECVPKLPPNLNHVLAYDCPSIKRMMLNSRSDFEKGTFKFDLTNSQELDATCLSNIEEEAYIKINDDAYKSVLFCFPGSAVPDWFSHRCQGHSITIRNDHLNLYGRNRFIGFALCVVLGPDFPYKFSLSHPGFRYELKFESDCQTHFHPNNKLKLEYGTQGCYRRFFPHTQDRYRIFAQHHTFLWKYELDLPRIDVETMTFEIVNDDDDDGGGGGGDSINEEPSIKVKECGIYPLYSKENDDDDDDDDDDDDDDDDDDDDDDDDNNINEEPSRDAVCLLDLFPSGDAVSSVDPSSSDNYTQNKRRKK 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04948 798 SUPERFAMILY L domain-like 314 520 - -
Trre8g04948 798 MobiDBLite consensus disorder prediction 730 759 - -
Trre8g04948 798 SMART LRR_typ_2 455 477 IPR003591 -
Trre8g04948 798 SMART LRR_typ_2 405 429 IPR003591 -
Trre8g04948 798 SMART LRR_typ_2 163 187 IPR003591 -
Trre8g04948 798 SMART LRR_typ_2 478 505 IPR003591 -
Trre8g04948 798 SMART LRR_typ_2 358 380 IPR003591 -
Trre8g04948 798 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 312 513 IPR044974 GO:0006952
Trre8g04948 798 MobiDBLite consensus disorder prediction 727 798 - -
Trre8g04948 798 Gene3D Ribonuclease Inhibitor 48 277 IPR032675 -
Trre8g04948 798 SUPERFAMILY L domain-like 20 255 - -
Trre8g04948 798 Pfam C-JID domain 567 730 IPR045344 -
Trre8g04948 798 MobiDBLite consensus disorder prediction 696 715 - -
Trre8g04948 798 Gene3D Ribonuclease Inhibitor 304 447 IPR032675 -
Trre8g04948 798 Pfam BspA type Leucine rich repeat region (6 copies) 189 266 IPR026906 -
Trre8g04948 798 Gene3D Ribonuclease Inhibitor 448 545 IPR032675 -
Trre8g04948 798 SUPERFAMILY ARM repeat 729 762 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04948 Trre-Chr8 52439837 52443339 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04948 357 521 WRKY Transcription Factor Family AT4G12020 31.765 2.63e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04948 - - tpra:123916959 570.852