Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04944 ATGTCTCATCCAACAACTCCAAAGCATCAGAGACAAAGTTATGCAGATGATTTAGTTAAGCATCATCAACGATTTGGCGGCAAAGTGGATGCGTGGAAGGCTGCTCTAACCCAGGTAGCTGGACTCTCAGGCTGGGATTCACGTGTAACAAGACCTGAAAGCACACTTGTTACAGAGATTGTGAAAGACATTGCGAAAAAATTGAAATGTTGTGTCTCAAGTGATTATGAAGGAATGACAGGAATTGACAACCATATTGAAAGTATTCAATCCTTGTTGCTCCTCGAGTCGCCGACTGTTCGAATCATAGGAATATGGGGCATGGGAGGGATAGGCAAAACAACAATTACCAATGCAATCTTTGAAAAACTTGCTACTCAGTTTAGTTCCAAAAGCATCATTCGAAATGTTCAACAAGAAATAGAAAGAGTTGGACTATCCCATGTAAAAAAAGAATACTTATCACAACTTCTAGATGAAAGAATTAAATCCTGTGAATCCAATTCTTACGATCAAAGGCTGAAACGGACAAAGGTTCTTCTTGTTTTTGATGATGTGAAAGATGCTGATCAACTTAAAGATTTGATTGGAACACATCATAAATTTGGCCAGGGGAGTAGAATCATTGTGACTAAAAAGGTTTTAGATTATGCTAAAGGGATCCCATTAGCTCTCAAAGTTTTGGGTTCAATGCTTTATGGCAAACCAAATGAAGTATGGGAAAGTCAGCTGCAAAAGCTCGAAAAGCTTCCCGATCATGAAATTTTTAGATTGTTGAAATTAAGTTATGATGGACTTGACGACGAACAAAAAAATATATTTCTTGACATAGCTTGTTTCCATATAGGAGAATTGGAGAAAGTTGTAGCACAAATGTTGGATTGTTGTGGTTTCTCCACTCGCATTGGATTGGATGTTCTTGAAGATAGGTGCCTTATATCTATTTCAGAAGGTGAAGTTTGGATGCATGATCTAATACGAGATATGGGGCGTCAAATTGTTATGCTTCAATGTGTTGATAATCCTGGAAAACGTAGTCGATTATGGAAGGCTAGTGAAATTGACGATGTTTTAAGCAAGGGAAAGGGAACAGATGCAATCCGGTGTATATTCCTAAACATGGATGAAATATGGGAAAAGAAAGTTCAACTACATGTTGATACATTTAAGAAAATGCATAATCTTAGAATGATCAAGTTCCACAATCCCTTTACGATAAATAAGTCAAATGTAACCTTTCATGGATTCCTGAAGAGTTTTCCTAATGATTTAAAATTTCTTCAATGGGATGGCTACCCTCAAAGATCCTTGCCACAAGACTTTTGCCCAGAAAATCTTGTTACACTTGATATGTCTTATAGCCATCTTGAACAATTTTGGAAGGGGGATCAGGCTTTACCAAGTTTGAAAAGGCTTGACCTTAGTTATTCTAAGAAGCTGATAGCAGTTCCAGACCTCTCTTTCACTCCAAATATTGAAGAAGTAATTCTTAGTGGTTGTGTAAGTTTGACACAAGTTTACTCCTCTGGCTTCCTCAACAATCTTAACTTCTTACTTTTAGAAGGTTGTACCGAACTCAAGAGTTTAAATATTCGTAGCAATATTCTATCAAGATCATCTGGATTAGTTGCTCTCCGTGATTGTCATAAACTTGAAACACTTTTAATCAGCAGTAGAATTGATCATGTGGTTCAATCATATAAAAAATTTTATGGATATTCTAAGGTCGGAGATATGCACAAACTTTGTGATGAAATGGAAATAAAAATAGAGTTGAATGATGAAGGGGATTACGAGATTTGTGGATCATTTTCAGATACTCTTTCAGGAAAAAGAATCAATGATTTTTGTTGGTTAGATATTTCCAAATGTGAGTCCCTATCATGCCTACCAGCTGAACTTTTAAATTTGAAGTTTCTAACAGGACTTTCTCTTCGTGGTTGTTTAAAGTTGGAGTTACCTGAAATCAAGGAGACTATGGAAAATTTAAAAGTGCTCATCTTAGACGAAACATCAATAAAAGAACTACCTTCATCCTTGTACAATTTAGTTGGGCTTGAAAAATTGAGCTTGCAAAGTTGCACAAAGCTTAAGACTATTCCATCTTCCATTGGAAACTTCGGTAAACTCCTCAAGTTAAACCTTACCTATTGTGAATCACTTGAAACTTTTCCGAGCAGCATTTTCAAATTGAAGTTGGCAAAACTCAATTTAGAAGGTTGCTCGATGCTTGCGACCTTTCCAGAGATCTTGGAGCCTGCAGAAAGTTTTACTTGCATTGACTTAACAGACACAGCAATAAAAGAACTACCTTCATCCCTGCACCATTTGGTCGGGCTTAAAGAATTAAGCTTGCAAAGTTGCACAAAGCTTAAGACTATTCCTTCTTCTATTGGAAACCTCAGTAAACTCCTCAAGTTAAAACTTGCCTACTGTGAGTCACTTGAAACTTTTCCGAGCAGCATTTTCAAATTGAAGTTGACAAAACTTGATTTCCAGGGTTGCTCAATGTTCAGGACCTTTCCTGAAATACCAAATGACATTGGCCGCTTGTCATCCTTGACTGAACTTTCATTGAAAGGAAGTAGTATTGTGAACCTTCCTGAGAGTTTGGCTCATCTATCAAGTTTGAAATCACTTAATTTAAGTGATTGCAAATTGCTTGAATGTGTACCAATGCTTCCACTAAATCTAAAGAAAGTTTTTGCATTTGATTGCCCTTCCATTAAGAGAATGATGCTAAATTCAAGGTCTGATTATGAAGAAGATACCTTCAAATTTCATCTGACCAATAGTCAAGAACTAGATGCTACTTGTTTGAGGAATATTGAAGAGGAAGCATATATTAAGATCAACGATGATGCATATAGGTCAGTGATCTTCTGTTTTCCAGGAAGTGCAGTTCCTGATTGGTTCCCTCACCGTTGCCAGGGACATTCAATAACTATAAGAAACAGTCATTTAAAATTATACGGGAGAAACATGCTTATTGGTTTCGCTCTGTGTGTGGTTTTGGGACCTAACTTTCCATACAAATTCTCCTTTTTTGATACTCATTTTACATACGAATTCAAAATTGAATGTGATGGTCAAACACCCTTTCATCCCAACAACAAGCTTGAAGTTGAATATGGTAAGATAAGTTATCGAAGATTGTCCCGACATACGCTATGTTATAGAAGATTTTCCCAACATCACACATTCCTGTGGAAGTATGAATTGGACTTGACAAGAATTGACTTCGAGACTATCACTTTTGAGATGGTAGATGAGCATCGCCGTCCCTTAAGTTTTCCAACAACCATGACAGTGATAGAATGTGGAATGTGTCCTCTGTATAGCAAAGAACCAAGTGGGGATGCAGTGTGTTCGGTAGACCCCTCCTCAAGTGACAACTACACACAATAA 3408 0.3709 MSHPTTPKHQRQSYADDLVKHHQRFGGKVDAWKAALTQVAGLSGWDSRVTRPESTLVTEIVKDIAKKLKCCVSSDYEGMTGIDNHIESIQSLLLLESPTVRIIGIWGMGGIGKTTITNAIFEKLATQFSSKSIIRNVQQEIERVGLSHVKKEYLSQLLDERIKSCESNSYDQRLKRTKVLLVFDDVKDADQLKDLIGTHHKFGQGSRIIVTKKVLDYAKGIPLALKVLGSMLYGKPNEVWESQLQKLEKLPDHEIFRLLKLSYDGLDDEQKNIFLDIACFHIGELEKVVAQMLDCCGFSTRIGLDVLEDRCLISISEGEVWMHDLIRDMGRQIVMLQCVDNPGKRSRLWKASEIDDVLSKGKGTDAIRCIFLNMDEIWEKKVQLHVDTFKKMHNLRMIKFHNPFTINKSNVTFHGFLKSFPNDLKFLQWDGYPQRSLPQDFCPENLVTLDMSYSHLEQFWKGDQALPSLKRLDLSYSKKLIAVPDLSFTPNIEEVILSGCVSLTQVYSSGFLNNLNFLLLEGCTELKSLNIRSNILSRSSGLVALRDCHKLETLLISSRIDHVVQSYKKFYGYSKVGDMHKLCDEMEIKIELNDEGDYEICGSFSDTLSGKRINDFCWLDISKCESLSCLPAELLNLKFLTGLSLRGCLKLELPEIKETMENLKVLILDETSIKELPSSLYNLVGLEKLSLQSCTKLKTIPSSIGNFGKLLKLNLTYCESLETFPSSIFKLKLAKLNLEGCSMLATFPEILEPAESFTCIDLTDTAIKELPSSLHHLVGLKELSLQSCTKLKTIPSSIGNLSKLLKLKLAYCESLETFPSSIFKLKLTKLDFQGCSMFRTFPEIPNDIGRLSSLTELSLKGSSIVNLPESLAHLSSLKSLNLSDCKLLECVPMLPLNLKKVFAFDCPSIKRMMLNSRSDYEEDTFKFHLTNSQELDATCLRNIEEEAYIKINDDAYRSVIFCFPGSAVPDWFPHRCQGHSITIRNSHLKLYGRNMLIGFALCVVLGPNFPYKFSFFDTHFTYEFKIECDGQTPFHPNNKLEVEYGKISYRRLSRHTLCYRRFSQHHTFLWKYELDLTRIDFETITFEMVDEHRRPLSFPTTMTVIECGMCPLYSKEPSGDAVCSVDPSSSDNYTQ 1135
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04944 1135 SUPERFAMILY "Winged helix" DNA-binding domain 254 358 IPR036390 -
Trre8g04944 1135 SUPERFAMILY L domain-like 614 910 - -
Trre8g04944 1135 SUPERFAMILY L domain-like 401 703 - -
Trre8g04944 1135 PRINTS Disease resistance protein signature 872 888 - -
Trre8g04944 1135 PRINTS Disease resistance protein signature 102 117 - -
Trre8g04944 1135 PRINTS Disease resistance protein signature 173 187 - -
Trre8g04944 1135 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 574 796 IPR044974 GO:0006952
Trre8g04944 1135 Gene3D Ribonuclease Inhibitor 366 582 IPR032675 -
Trre8g04944 1135 Gene3D - 2 69 IPR035897 -
Trre8g04944 1135 Gene3D - 70 221 IPR027417 -
Trre8g04944 1135 Gene3D Ribonuclease Inhibitor 609 748 IPR032675 -
Trre8g04944 1135 Pfam NB-ARC domain 83 211 IPR002182 GO:0043531
Trre8g04944 1135 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 72 277 IPR027417 -
Trre8g04944 1135 Pfam C-JID domain 963 1117 IPR045344 -
Trre8g04944 1135 Gene3D Ribonuclease Inhibitor 749 953 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04944 Trre-Chr8 52418080 52423532 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04944 709 892 WRKY Transcription Factor Family AT4G12020 29.730 8.89e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04944 - - tpra:123916959 1533.47