Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04942 ATGGATGTTCTCAAAGATAGGTGTCTTATATTTATTTCAGAAGGTAAAGTTTGGATGCATGATCTAATACAAGAAATGGGCCATGAAATTGTTATGCTTCAATGTGTCGATGATCCTGGAAAACGTAGTCGATTATGGAAGCCTGGTGATATTTATGATGTTTTAAGTAAGAACAAGGGAAAGGGAACCGATGCAACCCAGTGCATACACCTGGACTTATGCAAAATAAAGAAAGTTCAACTGCATGCTAAAACTTTTAAGAAAATGCATAATCTTAGAATGATCCATTTCTTTAAATCCGATGGATTTGAGAGTGACTCAAATGTGATCATTCATGTGTTTTCTAAGAGTTTTCCAGATCATTTAAAATTTCTTTGTTGGGATGAATTCCCTCAAAGATCTTTACCGCAAGACTTTTGCCCAGAAAATCTTGTTATACTTGAAATGCCTTTTAGCGATCTTGAACAACTTTGGGAGGGGGTTAAGGCTTTACCAAATTTGAAAAGGCTTAATATTAGTGAGTCTGAGAAGCTGATAGAAGTACCAGACCTCTCCTTGTCACCAAATATTGAAGAAATAATTCTTAGTGATTGTGTAAGTTTGGTACATGTTTACTCCTCTAGCTTCCTCAACAAACTTAACCGGTTATGTTTAGATGGTTGTACCAAACTCAAGAGTTTAAATATTCCTAGCAATATTCTATCGAGATCATCTGGATTAGTTGCTCTCCATGATTGTCACAACCTTGAAACGATTTTAATCAGCGGTAGAACTAATCAAGTGGTTCAATCAATCAAATGGTCTTATGTTTATGGATATTTGAACTACAACTCAATACGTGTTTTTCATGATACAATAACACAAATGTCGAATGATGAGGGAGAAGACTGTCTCAGTGGTTGTTCAAAGTTGGAGGAGTTACCTGAAATTGAGGAGACCATGGAAAATCTAAAAGTGCTCATCTTAGACAAAACAGCAATAAATGAACTACCTTCATCCTTGCACCGCTTGATCGGGCTTGAAGAATTAAGTTTGCAAAGTTGCACAAGGCTTAAGATTATTCCAAACAACATTGTTGACCTATATCTTCTATCCCGACTTGATTGTTCTGGTTGTTGTAGATTAACAGAAATCCCGAAAAACATTGGCCGCATGTCATCCTTGACTAAACTTTCACTGCAAGGAAGCAGTATTGTGACCCTTCCTGAGAGTATGGCTTCTCTTTCAAGTTTGAAATCACTTAATTTAAGTGATTGCAAATTGCTTGAATGTATCCCAAAGCTCCCACCACATGTAAATCATTTGTTTGCATTTGATTGTCCTTCCATTAAGAGAGTGGTGCCAAATTCAAGGTTGGAACTCATGTCTGATTCGAAAGAAGATACCTTCGAATTTCATCTCACGAATAGTCAAGAACTAGATTCATCTTTTTGGAGTAATATTGGAGACGAAGCATGTATTAAGATCACTGAAGATGCTTATGGTTCAGTGATCTTTTGTTTTCCAGGGAGTGCAGTTCCTTGCTGGTTCCATTACAGTTGCCAGGGACATTCAGTAACCATGAAAAAAGATTCTCCAAATTTGTGCAGTAAAAATAGGCTCATTGGTTTTGCTCTGTGTGTTATTTTGGGACATGAAGTTATGGATGACACAAGAAGAAGAAGCAGAAGCTTGACATACAAATTAGGATTTGAATACGATGGTCAACGACCACACTTTTTTTACGACCATTTGCCTATGCACTATTTGAATTGGAAGGGTCGCGATAGGTTTATCATCCAAGATCACACATTTCTATGGAAGTATCAATTCGACTTAGCAAGCATTGGCAACAAGCTCTTTCATGCCCACAGCTTCACTTTTGAGATCCTAGATGAGCAATTTCGTCCCTTAAATTTGCAATCAACCTTCACGGTGAAAGAATGTGGATTATGTCCTTTGTATACCAAAGAAAACGATGATAATGGCATTGAAGAACCGAGTGGGAGCAGAGCTGCACAATAA 2004 0.3733 MDVLKDRCLIFISEGKVWMHDLIQEMGHEIVMLQCVDDPGKRSRLWKPGDIYDVLSKNKGKGTDATQCIHLDLCKIKKVQLHAKTFKKMHNLRMIHFFKSDGFESDSNVIIHVFSKSFPDHLKFLCWDEFPQRSLPQDFCPENLVILEMPFSDLEQLWEGVKALPNLKRLNISESEKLIEVPDLSLSPNIEEIILSDCVSLVHVYSSSFLNKLNRLCLDGCTKLKSLNIPSNILSRSSGLVALHDCHNLETILISGRTNQVVQSIKWSYVYGYLNYNSIRVFHDTITQMSNDEGEDCLSGCSKLEELPEIEETMENLKVLILDKTAINELPSSLHRLIGLEELSLQSCTRLKIIPNNIVDLYLLSRLDCSGCCRLTEIPKNIGRMSSLTKLSLQGSSIVTLPESMASLSSLKSLNLSDCKLLECIPKLPPHVNHLFAFDCPSIKRVVPNSRLELMSDSKEDTFEFHLTNSQELDSSFWSNIGDEACIKITEDAYGSVIFCFPGSAVPCWFHYSCQGHSVTMKKDSPNLCSKNRLIGFALCVILGHEVMDDTRRRSRSLTYKLGFEYDGQRPHFFYDHLPMHYLNWKGRDRFIIQDHTFLWKYQFDLASIGNKLFHAHSFTFEILDEQFRPLNLQSTFTVKECGLCPLYTKENDDNGIEEPSGSRAAQ 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04942 667 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 301 448 IPR044974 GO:0006952
Trre8g04942 667 Pfam Leucine Rich Repeat 143 162 IPR011713 -
Trre8g04942 667 SUPERFAMILY L domain-like 113 429 - -
Trre8g04942 667 Gene3D Ribonuclease Inhibitor 63 269 IPR032675 -
Trre8g04942 667 Pfam C-JID domain 501 651 IPR045344 -
Trre8g04942 667 Gene3D Ribonuclease Inhibitor 273 481 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04942 Trre-Chr8 52403152 52405615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04942 298 426 WRKY Transcription Factor Family AT4G12020 32.331 6.98e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04942 - - pvu:PHAVU_002G323300g 492.656