Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04940 ATGGAAGTTCTCAAAGATAGGTGCCTTATATTTATTTCAGATGGTGGTATTTGGATGCATGATCTAATAAAAGAAATGGGGCAAGCAATTGTTCTCCTTGAAGACGATCCTAGAAAGCGTAGTCGATTATGGAAAACTAATGATATTTATGATGTTTTAAGTAAGAAGAAGGGAAAGGGAACAGATGCAATCAAGGGTATATCCCTAAACATGGGGGAAATAAAGAAAATACAACTAGATGCTGATACATTCAATGAAATGCATTATCTTAGAATGATCAACTTCCATAGTGGCAGATTTGTCTCAGAGTCAAATGTGACCTGTTCGGATGATTTAAAATTTCCGAATAATTTAAAATATCTATATTGGGATGGCTTCCCTCTAAGATCATTGCCGCAAGACTCTTGGCCAGAAGATCTCATTTCGGTTGAAATGCGTGCTAGCCATCTTGAACAACTTTGGGAGGGAGATCAGGTTTTACCAAATTTGAAAAGGCTTGACCTTAGTTATTCTGAGAAGCTGATAGCACTTCCAGATCTCTCTTTCTCTCCAAATATTGAAGAAGTAATTCTTAGTGGTTGTGTAAGTTTGACCCAAGTTAACTCCTCTTGCTTCCTCAACAATCTTAACTTGTTATGTTTAAAAGGTTGTACCAAACTCAAGAGACTACCAGATCTCTCTTTCTGTCCCAATATTGAAGAAATAATTCTTAGTGGTTGTGTAAGTTTGACCCAAGTTAACTCCTCTAGCTTCCTCAACAAACTTAACTTCTTATGTTTAGACTATTGTACCAAACTCAAGAGTATAAATATTCCTAGCAATATTCTATCAAGATCATCTGGATTCGTTGGTCTCCGTTATTGTCATAACCTTGAAACACTTTTAATCAGCAGTAGAATTGATCATGTGGTTCAATCATATAAATTTTTTTGTGGATATTCTAAGGTTGAAAAAATGGAAGATTTTTGGTATGAAATGGGAATAGAAATCATTTTCAGGAATGGTGAAGGGGATTATGAGATTTGGAAATCATTTTCAGACACTCTTTCAGGAAAAAGAATCAATGAGTTTTGTTGGTTAGATGCTTCATATTGTGGGTCCTTAACATGCCTACCAGCTGAACTTTTAAATTCGAAGTTTCTAACAGGACTTTCTCTTCGTCGTTGTTTTAAGTTGGAGGAGTTACCTGAAATCATGGAGACTATGGAAAATTTAAAAGTGCTCGCCTTAGACGGAACAGCAATAAAAGAACTACCTTCATCCTTGCACCATTTAGTTGGGCTTGAAAAATTGAGCTTGAGAAATTGCACAAAGCTTAAGACTATTCCATCTTTTATTGGAAACCTCAGTGAACTCCTCGAGTTGGACCTTACTGGTTGTGCATCACTTGAAACTTTTCCAAGTAGCATTTTCAAATTGAAGTTGACTAGACTCGATTTAAAGGGTTGCTCAATGCTTAGGACCTTTCCTGAAATACCAAATGACAGTGTCTGCTTGTCATCCTTGACTGAACTTTCATTGAAAGGAAGTAGTATTGTGAACCTTCCTGAGAGTTTGGCTCATCTATCAAGTTTGAAATCACTTGATTTAAGTGATTGCAAATTGCTTGAATGTGTTCCAAAGCTTCCACCAAATCTAAACCAAGTTTTGGCATACGATTGCCCTTCCATTAAGAGAATGATGCTAAATTCAAGGTCTGATTATGAAGAAGATACTTTCAAATTTCATCTGACCAATAGTCAAGAACTAGATGCTACTTGTTTGAGTAATATTGAAGAGGAAGCATATATTAAGATCAACGATGATGCATATAGGTCGGTGATCTTCTGTTTTCCAGGAAGTGCAGTTCCTGATTGGTTCTCTCACCGATGCCAGGGACATTCAATAACTATAAGAAACGATCATTTAAATTTGTACCGGAGAAACAGGTTTATTGGTTTCGCTCTGTGTGTGGTTTTGGGACCTGACTTTCCATACAAATTCTCTTGGTTTGATCCTGGCTTTAGATACGAATTAAAATTTGAATCTGATTGTCAAACACACTTTCATCCCAACAACAAGCTTGAACTTGAATATGGTACTCTAGGTTGTTATAGAAGATTTTTCCCACATACGCAAGATCGATATAGAATATTTGCCCAACATCACACATTCCTGTGGAAGTATGAATGGGACTTGGCAACAATTGGCAACTGGCTCTTTGATGCCCAGAATATCACTTTTGAGATTGTAGATGAGCATCGTCGTCCCTTAAGTTTTCCAACAACCATGACGGTGAAAGAATGTGGAATATGTCCTCTGTATATCAAGGAAAATGATGATGATGATGATGATGATGATGATGATGATGATAGCATTGAAGAACCAAGTGGGGATGCGGCGTGTTCAGTGGATCTCTCCTTAAATAGCAACTACACACAAAATAAAAGAAGAAAAAAATGA 2442 0.3673 MEVLKDRCLIFISDGGIWMHDLIKEMGQAIVLLEDDPRKRSRLWKTNDIYDVLSKKKGKGTDAIKGISLNMGEIKKIQLDADTFNEMHYLRMINFHSGRFVSESNVTCSDDLKFPNNLKYLYWDGFPLRSLPQDSWPEDLISVEMRASHLEQLWEGDQVLPNLKRLDLSYSEKLIALPDLSFSPNIEEVILSGCVSLTQVNSSCFLNNLNLLCLKGCTKLKRLPDLSFCPNIEEIILSGCVSLTQVNSSSFLNKLNFLCLDYCTKLKSINIPSNILSRSSGFVGLRYCHNLETLLISSRIDHVVQSYKFFCGYSKVEKMEDFWYEMGIEIIFRNGEGDYEIWKSFSDTLSGKRINEFCWLDASYCGSLTCLPAELLNSKFLTGLSLRRCFKLEELPEIMETMENLKVLALDGTAIKELPSSLHHLVGLEKLSLRNCTKLKTIPSFIGNLSELLELDLTGCASLETFPSSIFKLKLTRLDLKGCSMLRTFPEIPNDSVCLSSLTELSLKGSSIVNLPESLAHLSSLKSLDLSDCKLLECVPKLPPNLNQVLAYDCPSIKRMMLNSRSDYEEDTFKFHLTNSQELDATCLSNIEEEAYIKINDDAYRSVIFCFPGSAVPDWFSHRCQGHSITIRNDHLNLYRRNRFIGFALCVVLGPDFPYKFSWFDPGFRYELKFESDCQTHFHPNNKLELEYGTLGCYRRFFPHTQDRYRIFAQHHTFLWKYEWDLATIGNWLFDAQNITFEIVDEHRRPLSFPTTMTVKECGICPLYIKENDDDDDDDDDDDDSIEEPSGDAACSVDLSLNSNYTQNKRRKK 813
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04940 813 SUPERFAMILY L domain-like 79 298 - -
Trre8g04940 813 Gene3D Ribonuclease Inhibitor 348 493 IPR032675 -
Trre8g04940 813 Gene3D Ribonuclease Inhibitor 494 603 IPR032675 -
Trre8g04940 813 SUPERFAMILY L domain-like 358 582 - -
Trre8g04940 813 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 317 560 IPR044974 GO:0006952
Trre8g04940 813 Pfam C-JID domain 611 771 IPR045344 -
Trre8g04940 813 MobiDBLite consensus disorder prediction 771 796 - -
Trre8g04940 813 SMART LRR_typ_2 449 473 IPR003591 -
Trre8g04940 813 SMART LRR_typ_2 499 521 IPR003591 -
Trre8g04940 813 SMART LRR_typ_2 402 424 IPR003591 -
Trre8g04940 813 SMART LRR_typ_2 522 549 IPR003591 -
Trre8g04940 813 SMART LRR_typ_2 160 184 IPR003591 -
Trre8g04940 813 MobiDBLite consensus disorder prediction 771 789 - -
Trre8g04940 813 Gene3D Ribonuclease Inhibitor 41 318 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04940 Trre-Chr8 52378762 52381834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04940 401 540 WRKY Transcription Factor Family AT4G12020 33.803 4.02e-09 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04940 - - tpra:123916959 723.391