Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04933 ATGCCTTCTCCTTCATTTCACAAGCTTGTTCTACCCTCCACTCTTCAAGCTAAGAAACTGAGGCTTCCAGATGATTTCGTGAAGCAATACGGGGGCAATATTTCTTCGATTGTTACTCTCACAGTTCCTGATGGCAGCATATGGCGTGTAGGATTAAAAAAAGAAGACAACAAATTTTGGTTCCTCGATGGTTGGCATGATTTTGTTCAACACTATTCCATTGGTATCGGATACTTGTTGTTATTCAGATACGAAGGAAGGTCGTGTTTCATTGTTAATATTTACAGTTTTTCTACTTCTGAGATTAACTATAAATCACCCGCACAAAGCAGTAACGAAGCGCCTCACCGTGCAAAACATCTTGCTATTTTGGAAGATGTGGAAGATGAGGATCTAAACTTAGGAGAAGCTGGAAATACTCCTTCTTCCAAAAGTGCCAAATCGCCAGACAACCAGATGACCCGAGATAAAGGTCTCCAGTTTAATGTAGTTGAGTTTGAAAAGTCTACTGAAGAGGTGAAGTTGCGTACGGCTACTGATGAAAAGGTTAAAAGAAAGATGACAAAGAAGCGGAAATCAGATGTCCAGGAACGTCCTTCTGAACATGAAGATGAAGTAGAAATGCGCAATAGATTTTACGAAAGTGCATCTGCAAGGAAAAGAACTGTGACAGATGAAGAAAGAAAAAGGGCTAGGAATGAAGCAGAAGCATTTGAACCATCTAATCCTTTCTGCCGCGTTGTCCTGCGGCCGTCCTATTTATATAGGGGATGCATAATGTATCTACCATCCTGCTTTGCAGAGAAGCATTTGAACGGTATTTCAGACAATATAAAGCTTCAAATCTCTGATGGTGAGAAACAGTGGTCGGTTCGTTGTGTTTATAAAGACGGAAAAGCTAAGTTAAGCCAAGGGTGGTTTGATTTTGCGTTAGAGAACAATTTAGGTGAAGGAGATGTCTGTGTTTTTGAGCGGCTTGCAGCGGAGGAAGTAGTGCTGCATGTTACTTTTTTCCGTATTACTGAGGATGAATAA 1035 0.4077 MPSPSFHKLVLPSTLQAKKLRLPDDFVKQYGGNISSIVTLTVPDGSIWRVGLKKEDNKFWFLDGWHDFVQHYSIGIGYLLLFRYEGRSCFIVNIYSFSTSEINYKSPAQSSNEAPHRAKHLAILEDVEDEDLNLGEAGNTPSSKSAKSPDNQMTRDKGLQFNVVEFEKSTEEVKLRTATDEKVKRKMTKKRKSDVQERPSEHEDEVEMRNRFYESASARKRTVTDEERKRARNEAEAFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGISDNIKLQISDGEKQWSVRCVYKDGKAKLSQGWFDFALENNLGEGDVCVFERLAAEEVVLHVTFFRITEDE 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04933 344 MobiDBLite consensus disorder prediction 190 206 - -
Trre8g04933 344 Gene3D - 222 342 IPR015300 -
Trre8g04933 344 CDD B3_DNA 243 339 IPR003340 GO:0003677
Trre8g04933 344 MobiDBLite consensus disorder prediction 136 154 - -
Trre8g04933 344 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Trre8g04933 344 MobiDBLite consensus disorder prediction 133 154 - -
Trre8g04933 344 CDD B3_DNA 4 96 IPR003340 GO:0003677
Trre8g04933 344 Pfam B3 DNA binding domain 248 339 IPR003340 GO:0003677
Trre8g04933 344 Pfam B3 DNA binding domain 8 95 IPR003340 GO:0003677
Trre8g04933 344 SUPERFAMILY DNA-binding pseudobarrel domain 238 340 IPR015300 -
Trre8g04933 344 SMART B3_2 6 98 IPR003340 GO:0003677
Trre8g04933 344 SMART B3_2 245 341 IPR003340 GO:0003677
Trre8g04933 344 PANTHER B3 DOMAIN-CONTAINING 3 329 - -
Trre8g04933 344 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Trre8g04933 344 MobiDBLite consensus disorder prediction 184 206 - -
Trre8g04933 344 ProSiteProfiles B3 DNA-binding domain profile. 245 341 IPR003340 GO:0003677
Trre8g04933 344 Gene3D - 1 99 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04933 Trre-Chr8 52327260 52329457 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04933 1 342 B3 DNA Binding Superfamily AT3G18990 53.757 5.21e-120 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre8g04933 B3 4.1e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04933 - - gmx:100813285 458.373