Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04922 ATGGCTCACAGCAACATGCGACATCTTCATCATCCTAATCAATTTGATATTCAACAAATTTTATCAGAAGCACAATATAGATGGCTACGCCCACCTGAAATTTGTCAAATTCTCACTAATCATAACAACTTTCAGATTGCTTCTGAACCTTCATATATGCCTCCAAGTGGTTCACTTTTCCTATTTGATCGGAAAGTGACGCGATACTTTAGAAAAGATGGTCATAATTGGAGGAAGAAAAAAGATGGAAAAACTGTCGGGGAAGCTCATGAAAGACTAAAGGTTGGAAGTGTGGATGTATTACACTGCTACTATGCTCATGGAGAACAAGATGATAATTTTCAAAGACGAACTTACTGGATGCTTGAGGAGGAACTCTCACACATTGTTCTAGTCCATTATCGCGAAGTGAAGGGAACCAAGGCAACTGTAATATGCGCCAAAGAAAATGAAGAATCTCATCCTCATGCTCAACAAACATACAAAGTTATGTCCAACACAGAGATGGAGACTTCTTTACCGTCTAGCACGAACACTGCACAATCATCAGAATATGAAGAAACTGAATCAGCATTCAATAGCCATGCAAGTTCAGATTTCTACTCTTTTCTTGAGCTGCAACACCCTGTTGTTCAGAAGATTAAAGCTCAAATCGCTGATTCTATCTGTCCTCTACCATTCAAAGATGATGATCAACAAAGGTTACCTGTCATTCCTAAGGTGGATTATATCTCACTCAGTCAAGCTAATGAAACCAAATGCATTAATAATGTTGGATTGACATGCGAACTCTCAAAAATCCTCGGCTTCTCATCATGGCAAGATACCTTAGAAAATAGTTCTGGAAGTCATAATGTGTCTTTTCAGCCTTCTTTTCCTGAAACACAATCCAATAACATGGGAATAAATAGTACTTCTCAAGGATATGAGCCTTCTGGTTTTATTTCTACAAGCGCGTCGACTTGGCCCAACGATAGTGCGCATTCGGGCTCGACGTGTGAGGTTAGTTATAGCGACAATGAGAATGAAGTTGATTTTCAACAAACCTTGGAACAGTTCCTTATTCATCCACACCAACAACGCGAGGTTCTTATGCGGAATATCCCTCACAAAAAACTTTTAGAAGCAGAAGAGTTAAAATCGGATCTAGAGGTTGGTAGAAGCCTAGATGGAATACAAGCCACTCATTTCACTTCAAAGAAGACTCTATTAGATGTATCTATGGCAGAAGAGGGCCTGAAGAAGCTCGACAGTTTCAATAGATGGATGAGTAAAGAACTAGGAGACATGGAAGAATCGAGCAAAAAATCCACTTCTAGTGCCTATTGGGATACAGTTGAAACAGAAAATGGTGTCGGCAGTAGAACTATTCCTTCCCTAGTGCACCTGGAAAACTATGTACTAGATCCATCTATTTGCTATGATCAGCTTTTCAACATCATCGATTATTCCCCATGCTGGACATTTGAAGACTCAGAAATTAAGGTTATCATTTCAGGGCGATTCTTAAAGGGTCAAAATGAAGCAGAAGATTGTAAATGGTCATGCATGTTTGGCGAGGTAGAAGTGCCAGCGGAGATAATCGGGAATGGTATGCTCTGTTGTCATACTCCTCCACACAAGTCTGGCAGGGTTCCTTTCTATGTAACATGTTCTAATAGGTTAGCATGCAGTGAAGTGCGCGAATTTGATTTCCGAGTCAATTGTACTCAGGAAGTCAACACTGGAGGCGAGAGCAGAAGCAGCAACACTTTCGATACTTTTAATAAACGATTTGGAGAACTGTTGTCCCTGGAGCATGACTTCCCTCAGAGTTTAGATTCAGTTAGTGTGAATGAGAAATCTCAACTGAGAAGTAAAATCAGTTCATTGTTTAGGAGGGAGGATGATGAATGGGACAAGCTACTGAAATTTACTCTAGAGAAAGAATTTTCTCCGGAGCTTGTACAGGAGCAGCTGCTTGAAAATCTTCTAAAAGATAAGTTGCATGCATGGCTCCTTCAGAAAACAACTGAAGATGGGAAAGGTCCAAATGTATTAGATGAAGGTGGGCAAGGTGTGCTTCATTTAGCAGCTGCTCTTGGCTTCGATTGGGCCTTAGAACCAACAATAGTTGCTGGTGTGAATGTGAACTTTCGCGATGTAAACGGATGGACTGCTCTTCATTGGGCCGCGTTTTGTGGCAGGGAACGCACAGTTGCTTCCCTCATATCTCTTGGGGCAGCGCCAGGAGCACTTACTGATCCATGCCCACAACATCCTTCCGGTAGAACACCAGCTGACCTATCTTCTGCAAATGGACACAAAGGAATTGCAGGTTATCTTGCAGAATCTTTCCTAAGTGCACAACTTGAGTCTATTGATTTGAAACGAGGCGCAGGAGAAAGTCTTGGAACAAAAATAGTACAAAGAGTCCAAGAACAAAACGCTGCTCAACTTAACAATGAGGGAATCTCACATGAACTGTCACTGAAAGATTCACTGGCTGCAGTGTGCAATGCAACTCAAGCTGCTGCTCGCATTCATCAAGTTTTCAGAGTTCAATCATTCCAGAGAAAACAACAAAAGGAATATGGTGATGACAAATTTGGAATATCTGATGAACGAGCTCTTTCACTAATAGCAGTGAATGCGAAGCAACACAAGTCTGGACAACGTGATGAGCCTGTTCATGTTGCTGCAACGCGAATTCAGAACAAGTTCCGCAGTTGGAAAGGCAGAAAAGATTTTTTGATTATTCGACAGCGAATTGTAAAAATACAGGCTCATGTGAGAGGTCACCAGGTTAGGAAAAACCATGGGAAGATAATTTGGTCTGTTGGGATCATGGAAAAGGTTATATTACGTTGGCGTCGAAAAGGTAGTGGTTTGCGTGGGTTTAAATCGGAGGCTGTTTCTGAGGGAACTGTGGCAGAAGGTGTATCATCTTCCAATGAGGATGACTATGATTTTTTGAAAGAAGGCAGGAAGCAAACTGAGAAAAGGTTGGAGAAAGCCCTTGCTAGGGTGAAATCAATGGCACAATATCCAGATGCAAGAGACCAATATCACAGGCTATTGAATGTTGTAACTGAGTTACAAGAAAATCAGATAAAGCAAGATTGGAATTTTTGCAATTCAGAAGAAACAAGACAATTCAATAGCCTCTTTGATCTTGAAGCGTTGTTAGATGAAGATACTTTCATGCATACAGCTACTTAG 3201 0.4105 MAHSNMRHLHHPNQFDIQQILSEAQYRWLRPPEICQILTNHNNFQIASEPSYMPPSGSLFLFDRKVTRYFRKDGHNWRKKKDGKTVGEAHERLKVGSVDVLHCYYAHGEQDDNFQRRTYWMLEEELSHIVLVHYREVKGTKATVICAKENEESHPHAQQTYKVMSNTEMETSLPSSTNTAQSSEYEETESAFNSHASSDFYSFLELQHPVVQKIKAQIADSICPLPFKDDDQQRLPVIPKVDYISLSQANETKCINNVGLTCELSKILGFSSWQDTLENSSGSHNVSFQPSFPETQSNNMGINSTSQGYEPSGFISTSASTWPNDSAHSGSTCEVSYSDNENEVDFQQTLEQFLIHPHQQREVLMRNIPHKKLLEAEELKSDLEVGRSLDGIQATHFTSKKTLLDVSMAEEGLKKLDSFNRWMSKELGDMEESSKKSTSSAYWDTVETENGVGSRTIPSLVHLENYVLDPSICYDQLFNIIDYSPCWTFEDSEIKVIISGRFLKGQNEAEDCKWSCMFGEVEVPAEIIGNGMLCCHTPPHKSGRVPFYVTCSNRLACSEVREFDFRVNCTQEVNTGGESRSSNTFDTFNKRFGELLSLEHDFPQSLDSVSVNEKSQLRSKISSLFRREDDEWDKLLKFTLEKEFSPELVQEQLLENLLKDKLHAWLLQKTTEDGKGPNVLDEGGQGVLHLAAALGFDWALEPTIVAGVNVNFRDVNGWTALHWAAFCGRERTVASLISLGAAPGALTDPCPQHPSGRTPADLSSANGHKGIAGYLAESFLSAQLESIDLKRGAGESLGTKIVQRVQEQNAAQLNNEGISHELSLKDSLAAVCNATQAAARIHQVFRVQSFQRKQQKEYGDDKFGISDERALSLIAVNAKQHKSGQRDEPVHVAATRIQNKFRSWKGRKDFLIIRQRIVKIQAHVRGHQVRKNHGKIIWSVGIMEKVILRWRRKGSGLRGFKSEAVSEGTVAEGVSSSNEDDYDFLKEGRKQTEKRLEKALARVKSMAQYPDARDQYHRLLNVVTELQENQIKQDWNFCNSEETRQFNSLFDLEALLDEDTFMHTAT 1066
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04922 1066 ProSiteProfiles CG-1 DNA-binding domain profile. 17 143 IPR005559 GO:0003677
Trre8g04922 1066 Gene3D Immunoglobulins 473 570 IPR013783 -
Trre8g04922 1066 ProSiteProfiles Ankyrin repeat profile. 716 748 IPR002110 GO:0005515
Trre8g04922 1066 MobiDBLite consensus disorder prediction 167 189 - -
Trre8g04922 1066 SMART ANK_2a 755 784 IPR002110 GO:0005515
Trre8g04922 1066 SMART ANK_2a 716 745 IPR002110 GO:0005515
Trre8g04922 1066 ProSiteProfiles IQ motif profile. 891 919 IPR000048 GO:0005515
Trre8g04922 1066 Coils Coil 982 1002 - -
Trre8g04922 1066 Gene3D - 889 936 - -
Trre8g04922 1066 ProSiteProfiles IQ motif profile. 913 937 IPR000048 GO:0005515
Trre8g04922 1066 ProSiteProfiles Ankyrin repeat region circular profile. 716 741 - -
Trre8g04922 1066 Pfam CG-1 domain 23 136 IPR005559 GO:0003677
Trre8g04922 1066 Pfam IQ calmodulin-binding motif 915 933 IPR000048 GO:0005515
Trre8g04922 1066 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 882 938 IPR027417 -
Trre8g04922 1066 FunFam Calmodulin-binding transcription activator 2 889 937 - -
Trre8g04922 1066 SUPERFAMILY E set domains 479 565 IPR014756 -
Trre8g04922 1066 Gene3D - 645 787 IPR036770 -
Trre8g04922 1066 SMART CG_1_2 20 138 IPR005559 GO:0003677
Trre8g04922 1066 SUPERFAMILY Ankyrin repeat 672 777 IPR036770 -
Trre8g04922 1066 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 15 1029 - -
Trre8g04922 1066 SMART iq_5 889 911 IPR000048 GO:0005515
Trre8g04922 1066 SMART iq_5 912 934 IPR000048 GO:0005515
Trre8g04922 1066 FunFam Calmodulin-binding transcription activator 2 473 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04922 Trre-Chr8 52242994 52248387 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04922 14 1047 CAMTA Transcription Factor Family AT5G64220 47.064 0.0 876
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Trre8g04922 CG-1 1.1e-48 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04922 K21596 - gmx:100798875 1538.09