Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04918 ATGCATAATCACACCGAAATTACACAGCAACCAAATAATACAAACATTCCTCTTCACAACCTCAACGAACTAAGCACCAAAATGGATTCTATTCAACACTACATATCCCAAACCATCAACACAAACACTCTCCTCCCTAAACATCACTTAGACACACTCTCCAACCAAATCTCAAACACCATTCGCCAAGTCATAATTAATGCAACTGCTCTTCTCGCCACATATCATGTAACATCAACGGTTCATCCAGCCACGTGTTACAAGACAAGTGACAAGAATAACGCACCATTCACCACATGTCCTGCAACAATAACGGTCCCACCAACCAAATGTTACAGGACACGTGGTGAGAACAACAGTTGCATTAATGATGTTGTGATGAATTCCACAATAGATTCTGATATCGTGGAACTCGACACGGTGCAACTTCTCACAAATCACATTCATTTCTGTGAAATTTGCGGAAAAGGTTTCACGCGCAATGCGAATTTACGCATGCACATGCGCGCGCACGGAGACAAATTTAAAACACCCGAAGCATTGCGTTGCGCGAGGAAAACGCACTTATCCGCGACTCGGTTTTCATGTCCTTTTGAAGGATGCAAACGGAACAAGTTACACAAGAAGTTCACGCCGTTAAAATCAGTATTATGTTTGAGAAACCATTTCAAGAGAAGTCATTGTCCGAAAACTTACACGTGCGATCGTTGTCGGAGAAAGAGTTTTGCGGTGGTTTCGGATTTGAAGAGTCACCTGAAACAGTGTAAGGGAGAGTCCACGTGGAAGTGTTCGTGTGGAACAACGTTTTCTAGGAAGGAGAAATTGTTTGGACACGTGGAACGGTTTGAGGGACATTCGCCGGCAGTGGTTGAGGACGGTGATGAAGAGAAAGGAAAATCAATGGCGGCGGAAGAATGTGGGAGTGAAACTTTGACTAGGAAAAGTGATTGTTTGAATGGGTTACCAGAAGATTTCTTTGATGATTTGGATAAATTTTGGGCTTAA 1005 0.4289 MHNHTEITQQPNNTNIPLHNLNELSTKMDSIQHYISQTINTNTLLPKHHLDTLSNQISNTIRQVIINATALLATYHVTSTVHPATCYKTSDKNNAPFTTCPATITVPPTKCYRTRGENNSCINDVVMNSTIDSDIVELDTVQLLTNHIHFCEICGKGFTRNANLRMHMRAHGDKFKTPEALRCARKTHLSATRFSCPFEGCKRNKLHKKFTPLKSVLCLRNHFKRSHCPKTYTCDRCRRKSFAVVSDLKSHLKQCKGESTWKCSCGTTFSRKEKLFGHVERFEGHSPAVVEDGDEEKGKSMAAEECGSETLTRKSDCLNGLPEDFFDDLDKFWA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04918 334 Gene3D Classic Zinc Finger 229 291 - -
Trre8g04918 334 ProSiteProfiles Zinc finger C2H2 type domain profile. 149 176 IPR013087 -
Trre8g04918 334 FunFam B-cell CLL/lymphoma 6, member B 148 171 - -
Trre8g04918 334 Gene3D Classic Zinc Finger 149 173 - -
Trre8g04918 334 SUPERFAMILY beta-beta-alpha zinc fingers 148 172 IPR036236 -
Trre8g04918 334 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 10 304 IPR044300 GO:0010044|GO:0010447
Trre8g04918 334 Pfam Zinc finger, C2H2 type 150 171 IPR013087 -
Trre8g04918 334 SMART c2h2final6 149 171 IPR013087 -
Trre8g04918 334 SMART c2h2final6 232 253 IPR013087 -
Trre8g04918 334 SMART c2h2final6 194 227 IPR013087 -
Trre8g04918 334 ProSitePatterns Zinc finger C2H2 type domain signature. 151 171 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04918 Trre-Chr8 52217036 52218040 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04918 134 289 C2H2 Transcription Factor Family AT1G34370 56.790 3.28e-65 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre8g04918 zf-C2H2 1.7e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04918 - - cam:101510069 395.201