Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04916 ATGGACTTCTTATTTGTACTATTGCTATTGGGTTGCTTGTGTTCATTTGTATTGTCCGATCAGCAAGGAGATGCGCTGATTGAATTGAGGAAATCACTGAATGCTTCAGGTCAACAGCTTAGTGACTGGAATGAAAATCAAGTCAACCCTTGTACCTGGTCACGTGTTAACTGTGACGTAAACTCCAATGTTATTCAAGTTTCACTAGCGATGATGGGATTCCCAGGACACTTAACCCCGAAGATAGGAGCTCTAAAATATCTCCAAACTCTTTCTTTGCAAGGTAATGCGATCACTGGTGACATACCAAAAGAGTTTGGAAACCTGACAAGCTTGGTCTGGTTGGATTTGGAAAACAATAGATTAACTGGCGAAATACCGTCTTCCCTTGGTAATCTTAAAAAGCTCCAATTCTTGGCATTGAGTCAAAACAATCTCAGTGGGACCATTCCTGAATCACTTGCCAATATTTCAAGCTTGAACGAAATTCAGCTAGATTCAAATAATCTTAGCGGCCAAATTCCGCAGAAGTTATTTCAACTTTCTAAATACAATTTCAGCGGAAATAATTTGTATTGTGGTGTGAGTTATGGCCAACCTTGTGCACATGATAAAGTTGATCAAGGTTCATCACATAAACCAATTGGCCTCATAATTGGACTTAGCATAGCTTTTGTCGCTATCCTTGTTATTGGTGGTCTGCTGTTATTTTGGTGCAAGGGTAGACACAAGGGCTACAAGCGTGAAGTTTTTGTAGATGTTGCAGGTGAAGTTGATCGGCGAATTGCATTCGGTCAACTAAGAAGATTTGCATGGAGAGAATTACAAATAGCCACAGACAACTTCAGTGAGAAAAATGTTTTAGGACAGGGAGGCTTTGGAAAGGTTTATAAAGGTGTCCTTGCTGATAACACAAAAGTTGCTGTCAAAAGGTTAACCGATTATGAAAGCCCTGGGGGAGATGCAGCTTTCCAGCGTGAAGTTGAGATGATAAGCGTAGCTGTGCATAGGAACCTGTTAAAGCTGATTGGGTTTTGTACAACTCCGACTGAACGTCTCTTAGTTTATCCCTTCATGCAGAACTTAAGTGTTGCCTATCGTCTACGAGAACTCAAACTTGGGGAACCTGTTTTGGATTGGCCTACTAGAAAGCGAGTAGCTCTTGGAACTGCACGAGGCCTAGAATATCTCCACGAGCATTGCAATCCTAAGATTATTCATCGGGATGTGAAGGCAGCTAATGTATTACTTGATGAAGATTTTGAAGCAGTTGTCGGAGACTTTGGTTTGGCAAAGTTAGTAGATATTCGAAAGACTAATGTGACAACTCAAGTTCGTGGGACAATGGGCCACATAGCTCCTGAATATTTGTCGACCGGAAAGTCTTCAGAAAGGACCGATGTTTTTGGTTATGGGATTATGCTTCTGGAGCTTGTTACAGGTCAGCGCGCAATTGACTTCTCACGTTTGGAAGAGGAAGATGATGTGCTGTTGCTTGACCATGTTAAGAAATTGGAAAGAGAGAAAAGACTAGAAGCTATTGTTGATCGCAACCTAAATAAAAACTACAACATGCAAGAGGTAGAAATGGTGATAAAAGTTGCATTACTGTGCACACAAGCAACGTCGGAGGACCGTCCCCTAATGTCTGAGGTTGTAAGAATGCTAGAAGGAGAAGGGTTGGCCGAAAGGTGGGAGGAATGGCAACATGTAGAGGTGAATCGGAGGCAAGAATACGATAGATTACAAAGAAGATTCGATTGGGGAGAAGATTCAGTTTATAATCAAGATGCCATTGAGTTGTCTGGTGGGAGATGA 1818 0.4164 MDFLFVLLLLGCLCSFVLSDQQGDALIELRKSLNASGQQLSDWNENQVNPCTWSRVNCDVNSNVIQVSLAMMGFPGHLTPKIGALKYLQTLSLQGNAITGDIPKEFGNLTSLVWLDLENNRLTGEIPSSLGNLKKLQFLALSQNNLSGTIPESLANISSLNEIQLDSNNLSGQIPQKLFQLSKYNFSGNNLYCGVSYGQPCAHDKVDQGSSHKPIGLIIGLSIAFVAILVIGGLLLFWCKGRHKGYKREVFVDVAGEVDRRIAFGQLRRFAWRELQIATDNFSEKNVLGQGGFGKVYKGVLADNTKVAVKRLTDYESPGGDAAFQREVEMISVAVHRNLLKLIGFCTTPTERLLVYPFMQNLSVAYRLRELKLGEPVLDWPTRKRVALGTARGLEYLHEHCNPKIIHRDVKAANVLLDEDFEAVVGDFGLAKLVDIRKTNVTTQVRGTMGHIAPEYLSTGKSSERTDVFGYGIMLLELVTGQRAIDFSRLEEEDDVLLLDHVKKLEREKRLEAIVDRNLNKNYNMQEVEMVIKVALLCTQATSEDRPLMSEVVRMLEGEGLAERWEEWQHVEVNRRQEYDRLQRRFDWGEDSVYNQDAIELSGGR 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04916 605 SUPERFAMILY L domain-like 21 193 - -
Trre8g04916 605 FunFam Somatic embryogenesis receptor kinase 1 251 358 - -
Trre8g04916 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 405 417 IPR008271 GO:0004672|GO:0006468
Trre8g04916 605 SMART serkin_6 282 556 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04916 605 FunFam Somatic embryogenesis receptor-like kinase 1 359 576 - -
Trre8g04916 605 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 5 567 - -
Trre8g04916 605 Pfam Leucine rich repeat 85 122 IPR001611 GO:0005515
Trre8g04916 605 FunFam Putative LRR receptor-like serine/threonine-protein kinase 19 203 - -
Trre8g04916 605 SUPERFAMILY Protein kinase-like (PK-like) 262 557 IPR011009 -
Trre8g04916 605 Pfam Protein kinase domain 283 553 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04916 605 ProSitePatterns Protein kinases ATP-binding region signature. 288 310 IPR017441 GO:0005524
Trre8g04916 605 Gene3D Ribonuclease Inhibitor 19 203 IPR032675 -
Trre8g04916 605 Gene3D Phosphorylase Kinase; domain 1 251 358 - -
Trre8g04916 605 Gene3D Transferase(Phosphotransferase) domain 1 359 576 - -
Trre8g04916 605 Pfam Leucine rich repeat N-terminal domain 20 59 IPR013210 -
Trre8g04916 605 ProSiteProfiles Protein kinase domain profile. 282 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04916 Trre-Chr8 52194142 52198102 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04916 1 605 Receptor kinase-like Gene Family AT5G10290 75.702 0.0 924
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre8g04916 Pkinase 3.2e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04916 - - gmx:100793416 1042.72