Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04896 ATGGACGAGGAAGAGCATGAGGTTTACGGAGGAGAGATCCCAGACGTGGCAGAGATGGAAGCTGACATTGACATGTCCGCCGCCGACGATGAAGCCAGTGGTATGAAGGAGCTCGACGAGATGAGGCGCCGCTTGAAGGAAATGGAAGAAGAAGCTGCCGCTCTTCGCGAAATGCATGCTAAGGTCGAGAAGGAAATTGGCTCCGTTCAAGATCCTGCTGCTGTAGCTGCTTCTCAGGAAAACAGGGAAGAGGCTGATGCTCGGTCTGTTTTTGTCGGCAATGTTGATTATGCATGCACCCCAGAGGAAGTGCAGCAACACTTTCAGTCATGCGGTACAGTGAACAGGGTCACTATCCTGACAGATAAGTTTGGTCAGCCTAAAGGTTTTGCTTATGTGGAATTTGTTGAAACTGAAGCTGTTCAAGAGGCTCTCCTGTTAACTGAATCTGAACTGCATGGACGTCAATTGAAAGTTCTGCCTAAGAGGACTAATGTCCCTGGAATGAAACAATACCGTCCTAGGCGATTCAATCCTTACATGGCATATGGCTTCAGGAGGCCTTATGCTCCTCCTTACATGTACTCCCCTTATGGATATGGGAAGGCTCCTAGGTTTAGAAGGCCAAATCGTTACATGCCATATTATTAG 651 0.4823 MDEEEHEVYGGEIPDVAEMEADIDMSAADDEASGMKELDEMRRRLKEMEEEAAALREMHAKVEKEIGSVQDPAAVAASQENREEADARSVFVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVETEAVQEALLLTESELHGRQLKVLPKRTNVPGMKQYRPRRFNPYMAYGFRRPYAPPYMYSPYGYGKAPRFRRPNRYMPYY 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04896 216 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 24 174 - -
Trre8g04896 216 Gene3D - 13 171 IPR012677 -
Trre8g04896 216 SMART rrm1_1 89 160 IPR000504 GO:0003723
Trre8g04896 216 SUPERFAMILY RNA-binding domain, RBD 78 184 IPR035979 GO:0003676
Trre8g04896 216 CDD RRM_II_PABPs 89 160 - -
Trre8g04896 216 Coils Coil 31 65 - -
Trre8g04896 216 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 164 IPR000504 GO:0003723
Trre8g04896 216 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 90 158 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04896 Trre-Chr8 52036042 52040517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04896 79 159 Eukaryotic Initiation Factors Gene Family AT2G36660 32.927 8.32e-10 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04896 K14396 - gmx:100789721 368.237