Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04893 ATGGAACGATATGAAATTATTAAAGATATTGGCTCAGGAAACTTTGGTGTTGCAAAACTTGTAAGGGAAAAATGGAGTGATGAGTTATATGCTGTCAAATTCATTGAAAGAGGCTCTAAGATTGATGAGCACGTGCAAAGGGAGATTATTAATCACAGGTCCTTGAAGCATCCTAATATTGTTAGATTTAAAGAGGTGTTGGTTACTCCAACTCATTTAGCAATAGTGATGGAATATGCTGCTGGAGGAGAATTGTTTGAAAGAATTTGTAGTGCTGGTAGATTCAGTGAGGATGAGGCAAGATATTTCTTCCAGCAACTGATTTCTGGAGTTAGCTATTGCCATTCAATGGAAATTTGCCATAGAGATCTTAAGCTAGAAAACACACTTCTAGATGGAAGTTCAGCTCCTAGACTCAAAATATGTGACTTTGGTTACTCAAAGTCATCTGTTTTGCACTCTCAACCAAAATCAACTGTAGGGACCCCTGCTTATATTGCACCAGAGGTATTGTCAAGAAGAGAATATGATGGAAAGATTGCAGATGTTTGGTCTTGTGGGGTGACTTTATATGTTATGCTTGTTGGTGCTTATCCTTTTGAAGATCCAGAAGACCCTAAAAACTTCAGAAAAACACTTCAGAGAATTCTTAGTGTACACTATTCAATTCCAGACTATGTTCGTATTACACAAGAGTGCAGACATCTTTTATCAAGAATATTTGTTGCCAACCCTGAAAAGAGAATTACTATACCAGAGATTAAAAAGCATCCATGGTTCTTAAAGAATTTGCCACTAGAATTTATAGAAGAGAGTCAAGGTAATTTACAAAATGGTGAAAATGATTCATCACAAAGCATAGAAGAAATATTGTCCATAATTCAAGAGGCTAGAAAAGCAGGGGATGGCCTAAAAGTTGGTGAACAGTTTGTTGGGGGCAGTATGGATATTGATGATTTGGACACAGATGCTGACATTGATGACATTGAAACTAGCGGTGATTTTGTTTGTGCCTTATGA 1020 0.3686 MERYEIIKDIGSGNFGVAKLVREKWSDELYAVKFIERGSKIDEHVQREIINHRSLKHPNIVRFKEVLVTPTHLAIVMEYAAGGELFERICSAGRFSEDEARYFFQQLISGVSYCHSMEICHRDLKLENTLLDGSSAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLSRREYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPKNFRKTLQRILSVHYSIPDYVRITQECRHLLSRIFVANPEKRITIPEIKKHPWFLKNLPLEFIEESQGNLQNGENDSSQSIEEILSIIQEARKAGDGLKVGEQFVGGSMDIDDLDTDADIDDIETSGDFVCAL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04893 339 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Trre8g04893 339 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Trre8g04893 339 SUPERFAMILY Protein kinase-like (PK-like) 2 268 IPR011009 -
Trre8g04893 339 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Trre8g04893 339 FunFam Serine/threonine-protein kinase SAPK2 1 79 - -
Trre8g04893 339 Gene3D Transferase(Phosphotransferase) domain 1 80 266 - -
Trre8g04893 339 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04893 339 CDD STKc_SnRK2 3 259 - -
Trre8g04893 339 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
Trre8g04893 339 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04893 339 PANTHER SERINE/THREONINE KINASE 2 282 - -
Trre8g04893 339 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04893 Trre-Chr8 52017322 52020075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04893 3 278 CBL-interacting serine-threonine protein kinases AT4G24400 43.158 5.16e-70 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Trre8g04893 Pkinase 8.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04893 K14498 - gmx:100807981 614.379