Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04880 ATGAAGAGACTTGGCAGCTCTGATTCTTTAGGTGCCCTCATGACCATTTGTCCACCACCAGAGGAACAAAGTCCAAGGAACAACAACAACGTGTATGGAAGGGAATTTCAGTCGATGTTAGAAGGATTAGATGAAGAAGGGTGTATTGAAGAACCAGGACAGAAAAAAAGAAGACTAAGTGTGGATCAAGTTAAGGCTTTAGAGAAGAATTTTGAAGTTGAAAATAAGCTTGAACCAGATAGAAAAGTTAAGCTTGCTCAAGAACTTGGTTTGCAACCAAGACAAGTTGCTGTTTGGTTTCAAAACCGTCGTGCTAGATGGAAAACTAAACAGTTGGAAAGAGATTATGGTGTTCTTAAAGGCAATTATGATGCACTTAAACTTAATTATGACAATCTTCAACGTGACAATGAAAATTTGCTCAAAGAGGTTAAGGAATTGAAATCAAGATTACAATTAGAAGAAGAAAACACAACCACTGAAAGTGATGTTTGTGTGAAACAAGAGTTGATAACATTGCAAGAATCAGAAAACACTGATTCTGATGAAACCGCCATTCTTAGATCCGATTCTAAGGACTTAAACTACGACTGTTACAAAAATGGCGATGTAGTAGCTTCTCTGTTTCCTGCGGATTTCAAAGACGGTTCTTCAGATAGCGACTCAAGCGCAATCTTGAACGAAGAAACCAACAATAACAGTCCCAACGCAGCGATTTCTTCATCCGGGGTGTTTCAAAATCATAACTTTTTGATGTCTCCTGGTTCTTCTTCGCTTAAGTTCAATTGTTCTGAATCATCTTCGCCGTCTTCAATGAGTAATAACTGCTTTCAGTTTCAGACACAGTATGTGAAAATGGAAGAGCATAATTTTCTTGGTGCTGATGAGACTTGTGATTTTTTCTCAGATGAACAACCACCAACTCTTCAATGGTATTGTTCTGAAGAGTGGAATTAA 957 0.3793 MKRLGSSDSLGALMTICPPPEEQSPRNNNNVYGREFQSMLEGLDEEGCIEEPGQKKRRLSVDQVKALEKNFEVENKLEPDRKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKGNYDALKLNYDNLQRDNENLLKEVKELKSRLQLEEENTTTESDVCVKQELITLQESENTDSDETAILRSDSKDLNYDCYKNGDVVASLFPADFKDGSSDSDSSAILNEETNNNSPNAAISSSGVFQNHNFLMSPGSSSLKFNCSESSSPSSMSNNCFQFQTQYVKMEEHNFLGADETCDFFSDEQPPTLQWYCSEEWN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04880 318 CDD homeodomain 54 111 IPR001356 GO:0003677
Trre8g04880 318 Gene3D - 53 117 - -
Trre8g04880 318 MobiDBLite consensus disorder prediction 219 239 - -
Trre8g04880 318 SMART HOX_1 53 114 IPR001356 GO:0003677
Trre8g04880 318 FunFam homeobox-leucine zipper protein ATHB-6-like 58 104 - -
Trre8g04880 318 MobiDBLite consensus disorder prediction 1 31 - -
Trre8g04880 318 ProSiteProfiles 'Homeobox' domain profile. 50 110 IPR001356 GO:0003677
Trre8g04880 318 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 44 312 IPR045224 GO:0003700
Trre8g04880 318 ProSitePatterns 'Homeobox' domain signature. 85 108 IPR017970 GO:0000981|GO:0006355
Trre8g04880 318 PRINTS Lambda-repressor HTH signature 81 90 IPR000047 GO:0003677
Trre8g04880 318 PRINTS Lambda-repressor HTH signature 90 106 IPR000047 GO:0003677
Trre8g04880 318 Pfam Homeodomain 55 108 IPR001356 GO:0003677
Trre8g04880 318 SUPERFAMILY Homeodomain-like 50 112 IPR009057 -
Trre8g04880 318 Coils Coil 123 161 - -
Trre8g04880 318 Pfam Homeobox associated leucine zipper 110 152 IPR003106 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04880 Trre-Chr8 51897270 51900075 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04880 1 318 Homeobox Transcription Factor Family AT2G22430 46.705 7.12e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre8g04880 Homeodomain 6.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04880 K09338 - gmx:100796213 434.491