Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04879 ATGGCAATACAAAGAAACGGTTCTGTGAGTTCCGTTCGCGAAGTCGGGGGAGTAATTGAAGAGGAACCTAATACAGTTGTGGTTGATAAAGCAATCTATGTTGCTGTGTCAAAGGATGTAAAAGAGAGTAAATTGAATTTGATATGGGCAATACAGAATTCTGGAGGAAAGAAGATTTGTATTCTCTTTGTTCATGTGCCTGCAACAATGATCCCTTTGACTAGAATTATCCATGTTAAGAGATCTTTTAAGGTAGAAGCTTATGACTTGGCTAATCTTTCTAAGAATGTTGGATCAAAAGTCTGGAAGGGTAATCCTATGAATTTATTGAAAGGGCCTGTGAATTTGTATGGAAAATCTGATGCAATAAATGAAGAAATCGAAGCCGCAACTTCTGCCACAAATGCTCATAGCTTTATTACATTGCTTCCTAATGGCTACAACATTCAGGTTGGAGAGCAAGGAGTTCAATTATCTGAGGGGACAAAAACAGAGGATTCATATTTCACCCTTTTGTTGTTGATTTGA 528 0.375 MAIQRNGSVSSVREVGGVIEEEPNTVVVDKAIYVAVSKDVKESKLNLIWAIQNSGGKKICILFVHVPATMIPLTRIIHVKRSFKVEAYDLANLSKNVGSKVWKGNPMNLLKGPVNLYGKSDAINEEIEAATSATNAHSFITLLPNGYNIQVGEQGVQLSEGTKTEDSYFTLLLLI 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04879 175 PANTHER ABC TRANSPORTER B FAMILY 116 163 IPR039421 -
Trre8g04879 175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 117 163 IPR027417 -
Trre8g04879 175 Gene3D - 117 163 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04879 Trre-Chr8 51879802 51880976 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04879 19 73 U-box Gene Family AT2G45910 56.364 8.26e-16 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04879 K05658 - lja:Lj1g3v2661410.1 107.842