Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04876 ATGGGAAGAACCAAAGTTTCCACCCTTTTTCCTTCCAATAACAACCATCATTATTCTCTTCCTCTTTCCAATACCATTCACCAAACTCTTGTTAACAAACCCAATTCACAGAAAAACGGTTTCCCCTTTTCAGTTTTGGAATTTCTCCGACGCTTTATCTATGGAAGGAAAGTTGACGGAGGTTCAAGAACAGAGGAAGAAGAGAAAGTGTATTCTTGGTTATATACCTTGGCTCAGTCTGAGAAAAACATGGTCTTTGAGTACGTTAGGTCAACTGAAAGAGGCTTAAGTTTTACTGAAGCTGAGAGGAGGCTACAGGAAAATGGCCGAAATGTTCCGCTCGAGTATTCTTTTCCAAGCTGGTGGCATCTTCTATGGAACGCGTTTTTCCATCCTTTCAATATGATTCTGATTGTTTTATCTGCTACGTCATTCATTGCCAGGGACTATCCCAATGGTTTCATCATGTTCATATTGGTTTTTATTAGTGTCATCCTTCGCTTCTGTCTGGAACACAAAAGCTCAAAAGCAGCTATGAAGCTTTCAGAATTCTTAAGATGTCCTATAAAAGTTCAAAGATGTGCTGGTAGAATTGAGCAGAAAGAACTTATAGTTCAAGTTGATCACAAGGATGTAGTTCCAGGTGACATTGTGATTTTTGAACCGGGCGACCTCTTTCCCGGAGATGTCAGACTGTTATCTTCAAAACACCTTGTTGTAAGCCAGTCCTCACTAACCGGGGAATCTTGGGCAACTAACAAAACTTCCGATGTTAGAGAAGATTATAACACTCCTTTACTAGATTTAAGGAACATTTGCTTTATGGGAACAAATGTGGTATCAGGAACTGGAACAGGTTTAGTTATTTCAACTGGATCCGATACTTACATGAGCACCATGTTTTCAAAAATTGGGAAGAAGAAGCCACCAGATGACTTCGAAAAGGGTCTCAGATTGATATTTTACATGCTTATTTCAGTTATGCTTGTAGTTGTTACAATTATGTTTGTGACAGATTACACTACATCTCATAATTTGAGCAAGAGTGTACTCTTTGCCATCTCAGTTGCGTCTGTCCTCAATCCGCAGATGCTTCCCCTCATCATTAACACATGCCTCGCGAAAGGAGCACTCGCTATGGCTAAAGATAGATGTATTGTAAAAAGTCTAACAACTATACGTGAGATGGGATCAATGGATATCCTTTGTATTGATAAGACAGGCACCCTAACAATGAATCATGCAATCCTGGTTAATCATCTTGACTGCAGAGGCTTACCTCGAGAAAAAGTTCTACGCTACGCCTTCCTCAATTCTTACTTCAAAACTGAGCAAAAGTATCCTCTGGATGATGCAATTCAAGCACATGTATATTCAAATGGATTCAAGTTTCAGCCATCCAAGTGGAAGAAAATAGATGAGATTCCTTTCGACTTCATAAGAAGACGAGTATCTGTCATGTTAGAAAGAGATGACAAACACTCGCAGTTCTTCAGGATGTTAATGGTAACGAAAGGAGCATTGTTGGAAGTCATAGAAGTTTGTTCTTTTATTGAGAATTTTGAAACAAATGAAATTTCTACCTTCTCCTCAGATGATTATCAAAGGATTTTAAATCTATCTGAACAATTGAGCAATGAAGGGTTAAGGGTTATAGCAGTAGCTATAAAGAAGCTTGAAATGCAGAAAACTTGCGAAACAAGTAATGGAAGCAAGAGAGGTGCCGATGATTTCGAAAGAGACATGATATTCCTTGGCCTAATAACATTTTTTGACCCACCTAAGGACTCAGCAAAGGAAGCTCTTTCGTGTTTGGCTGAGAAGGGAGTGAAAGCAAAAGTTTTAACAGGCGACTCACTTTCCTTAACCACAAGAATATGCAGAGAAGTTGGCATAAGTACCACTCATGTTATAACAGGACCTGAGCTAGAAGATTTTGATCAAGAAACTTTCCATGAGACTGTTAAAAGAGCCACGGTACTAGCCCGTCTCACCCCAACTCAGAAACTCCGTGTGGTGCAATCGTTGCAGACAATAGGAAACCATGTAGTTGGTTTCTTAGGAGACGGTGTGAATGATTCACTAGCATTAGATGCTGCTCACGTAAGCATTTCAGTGGATTCCGGCGTAGCCATTGCCAAAGACATGGCGGATATAATCTTACTAGAGAAAGATCTCAACGTGCTCGTCGCAGGTGTTGAACATGGTCGTCTCACATTCGGCAACACAATGAAGTATATAAAGATGTCAGTTATTGCTAACTTGGGAAGTACCATTTCACTCCTCATAGCAAAACTATTCCTTAAATACGAGCCTTTAACTTCTAGACAGCTTCTTACACAGAATTTCATGTACAGCCTCGGACAAATCGTTATCCCTTGGGACAAAATCGGCGAAGAGTATTTAAAAACTCCTCATAAGTGGTCGGAGCGAGGCTTACCTATGTTCATATTATGGAATGGTCCAGTATGCACATTATGTGATATGGCAACACTTTTGTTTCTTTTGTTCTATTACAAAGCTTATGATGATGTGAATGAGAATTTTTTTCATTCAGCTTGGTTCATTGAGGGTCTTCTCATGCAAACTCTCATTGTTCATTTGATGAGGACTGAGAAAATTCCTTTCATACAAGATATTGCTTCTTGGCCTGTGATTTTATCTACTCTTTTGATATCTTCAATTGGAATTGCAATTCCATTTACTCCTATTGGGAAGGTTATGGGATTTACAATTCTACCCCTCTCCTATTTTGGATTTTTGGCTCTTATTTTTCTAGGATATTTTACAATTGGTCAAGTGGTTAAGAGACTTTACATATTGGTTTATAAGAAATGGCTTTGA 2844 0.3903 MGRTKVSTLFPSNNNHHYSLPLSNTIHQTLVNKPNSQKNGFPFSVLEFLRRFIYGRKVDGGSRTEEEEKVYSWLYTLAQSEKNMVFEYVRSTERGLSFTEAERRLQENGRNVPLEYSFPSWWHLLWNAFFHPFNMILIVLSATSFIARDYPNGFIMFILVFISVILRFCLEHKSSKAAMKLSEFLRCPIKVQRCAGRIEQKELIVQVDHKDVVPGDIVIFEPGDLFPGDVRLLSSKHLVVSQSSLTGESWATNKTSDVREDYNTPLLDLRNICFMGTNVVSGTGTGLVISTGSDTYMSTMFSKIGKKKPPDDFEKGLRLIFYMLISVMLVVVTIMFVTDYTTSHNLSKSVLFAISVASVLNPQMLPLIINTCLAKGALAMAKDRCIVKSLTTIREMGSMDILCIDKTGTLTMNHAILVNHLDCRGLPREKVLRYAFLNSYFKTEQKYPLDDAIQAHVYSNGFKFQPSKWKKIDEIPFDFIRRRVSVMLERDDKHSQFFRMLMVTKGALLEVIEVCSFIENFETNEISTFSSDDYQRILNLSEQLSNEGLRVIAVAIKKLEMQKTCETSNGSKRGADDFERDMIFLGLITFFDPPKDSAKEALSCLAEKGVKAKVLTGDSLSLTTRICREVGISTTHVITGPELEDFDQETFHETVKRATVLARLTPTQKLRVVQSLQTIGNHVVGFLGDGVNDSLALDAAHVSISVDSGVAIAKDMADIILLEKDLNVLVAGVEHGRLTFGNTMKYIKMSVIANLGSTISLLIAKLFLKYEPLTSRQLLTQNFMYSLGQIVIPWDKIGEEYLKTPHKWSERGLPMFILWNGPVCTLCDMATLLFLLFYYKAYDDVNENFFHSAWFIEGLLMQTLIVHLMRTEKIPFIQDIASWPVILSTLLISSIGIAIPFTPIGKVMGFTILPLSYFGFLALIFLGYFTIGQVVKRLYILVYKKWL 947
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04876 947 SFLD p-type atpase 385 737 IPR044492 -
Trre8g04876 947 Gene3D - 187 291 - -
Trre8g04876 947 SUPERFAMILY HAD-like 578 735 IPR036412 -
Trre8g04876 947 PANTHER CATION TRANSPORTING ATPASE 87 937 - -
Trre8g04876 947 ProSitePatterns E1-E2 ATPases phosphorylation site. 405 411 IPR018303 -
Trre8g04876 947 Pfam Cation transporter/ATPase, N-terminus 85 143 IPR004014 -
Trre8g04876 947 Pfam haloacid dehalogenase-like hydrolase 399 700 - -
Trre8g04876 947 SMART Cation_ATPase_N_a_2 76 149 IPR004014 -
Trre8g04876 947 Pfam E1-E2 ATPase 204 382 - -
Trre8g04876 947 SUPERFAMILY Calcium ATPase, transduction domain A 202 302 IPR008250 -
Trre8g04876 947 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 396 594 IPR023299 GO:0000166
Trre8g04876 947 Gene3D - 150 897 - -
Trre8g04876 947 Gene3D - 400 724 IPR023214 -
Trre8g04876 947 SUPERFAMILY Calcium ATPase, transmembrane domain M 91 944 IPR023298 -
Trre8g04876 947 Gene3D - 415 591 IPR023299 GO:0000166
Trre8g04876 947 NCBIfam magnesium-translocating P-type ATPase 68 946 IPR006415 GO:0015444|GO:0015693|GO:0016020
Trre8g04876 947 NCBIfam HAD-IC family P-type ATPase 649 765 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre8g04876 947 NCBIfam HAD-IC family P-type ATPase 158 450 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Trre8g04876 947 PRINTS Magnesium-transporting ATPase signature 795 808 IPR006415 GO:0015444|GO:0015693|GO:0016020
Trre8g04876 947 PRINTS Magnesium-transporting ATPase signature 316 332 IPR006415 GO:0015444|GO:0015693|GO:0016020
Trre8g04876 947 PRINTS Magnesium-transporting ATPase signature 745 760 IPR006415 GO:0015444|GO:0015693|GO:0016020
Trre8g04876 947 PRINTS Magnesium-transporting ATPase signature 437 450 IPR006415 GO:0015444|GO:0015693|GO:0016020
Trre8g04876 947 PRINTS Magnesium-transporting ATPase signature 850 871 IPR006415 GO:0015444|GO:0015693|GO:0016020
Trre8g04876 947 PRINTS Magnesium-transporting ATPase signature 900 921 IPR006415 GO:0015444|GO:0015693|GO:0016020
Trre8g04876 947 PRINTS Magnesium-transporting ATPase signature 763 774 IPR006415 GO:0015444|GO:0015693|GO:0016020
Trre8g04876 947 PRINTS Magnesium-transporting ATPase signature 815 831 IPR006415 GO:0015444|GO:0015693|GO:0016020
Trre8g04876 947 SFLD Haloacid Dehalogenase 385 737 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04876 Trre-Chr8 51867532 51871987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04876 94 810 Primary Pumps ATPases(2) AT1G10130 26.463 4.91e-61 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04876 K01531 - gmx:100795153 1561.97