Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04860 ATGTGTAGGGTTTTATCTGTCCACGGCTGTTCCTGTCCATTATTTTTCTTTATGCATACCCAGGTTAGGAAACTCTGTTCAAATGTGCTTGTTGATTCAAAGGGTTTGAGGTGTACTCCGAGGTTTCAAAAGCAGCAGGACATCGAGCATGAGGCCTTAGAAGCTCGCAGGGTTGGACTATGTCAGGATATTGATATGGAAAGATTGAACAAGCTTGCAGCTTTTCAGAGAAAAGGTCTTCAAGGTGCCTTCCTTTCCTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCCGAGAAGGAAGAGGCTGTCCAGAAAGAGCCCGAGTCCCAATTGGCAACAAACAAGAAGAAGTCTCAAGCTCTTCGAAGTGGCGCTTCATCCTAA 390 0.4513 MCRVLSVHGCSCPLFFFMHTQVRKLCSNVLVDSKGLRCTPRFQKQQDIEHEALEARRVGLCQDIDMERLNKLAAFQRKGLQGAFLSYMSSPCHIELILSEKEEAVQKEPESQLATNKKKSQALRSGASS 129
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04860 129 MobiDBLite consensus disorder prediction 115 129 - -
Trre8g04860 129 PANTHER 60S RIBOSOMAL PROTEIN L17 82 122 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre8g04860 129 MobiDBLite consensus disorder prediction 107 129 - -
Trre8g04860 129 Gene3D Ribosomal protein L22/L17 75 128 IPR036394 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04860 Trre-Chr8 51765718 51767597 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04860 81 129 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 63.265 1.67e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04860 K02880 - zju:107428381 75.0997