Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04859 ATGTGTAGGGTTTTATCTGTCCACGGCTGTTCCTGTCCATTATTTTTCTTTATGCATACCCAGGTTAGGAAACTCTGTTCAAATGTGCTTGTTGATTCAAAGGGTTTGAGGTGTACTCCGAGGTTTCAAAAGCAGCAGGACATCGAGCATGAGGCCTTAGAAGCTCGCAGGGTTGGACTATGTCAGGATATTGATATGGAAAGATTGAACAAGCTTGCAGCTTTTCAGAGAAAAGGTCTTCAAGCCTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCCGAGAAGGAAGAGGCTGTCCAGAAAGAGCCCGAGTCCCAATTGGCAACAAACAAGAAGAAGTCTCAAGCTCTTCGAAGTGGCGCTTCATCCTAA 378 0.4497 MCRVLSVHGCSCPLFFFMHTQVRKLCSNVLVDSKGLRCTPRFQKQQDIEHEALEARRVGLCQDIDMERLNKLAAFQRKGLQAYMSSPCHIELILSEKEEAVQKEPESQLATNKKKSQALRSGASS 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04859 125 PANTHER 60S RIBOSOMAL PROTEIN L17 80 118 IPR005721 GO:0003735|GO:0006412|GO:0015934
Trre8g04859 125 Gene3D Ribosomal protein L22/L17 70 124 IPR036394 GO:0003735|GO:0005840|GO:0006412
Trre8g04859 125 MobiDBLite consensus disorder prediction 111 125 - -
Trre8g04859 125 MobiDBLite consensus disorder prediction 103 125 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04859 Trre-Chr8 51765718 51767597 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04859 80 125 Cytoplasmic Ribosomal Protein Gene Family AT1G27400 65.217 1.89e-12 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04859 K02880 - jre:108982519 75.0997