Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04856 ATGGGAGTCTTCAGCTTCGTCCTCAACAAATCCGGCGCCGAATGGTCCGCAAAGCAATACTCCGGTGACATCGAGGCCTCCGGTGATTCTACATTCGACATCCAAAGGAAACTTGTTAAGGCCGTTCTCGCTGTCGATTCATCCGGCGGTGTTCAGTCCTCTTACTCTCCCGTCTCTCCTTCCTCTGGCGTCTTCCTGGTGGTTGTTGGTGGTGCAGTATTTGTTGGTGGTGGTGCTGCCGCTGCTGCTCCCGCAGGAGGTGCAGCTCCAGCTGATGCTGCCCCTGCTGAAGCAAAGAAAGAAGAAAAGGTTGAGGAAGAGGAGGAAGATGATGATATGGGATTCTCACTCTTTGATTAG 360 0.5306 MGVFSFVLNKSGAEWSAKQYSGDIEASGDSTFDIQRKLVKAVLAVDSSGGVQSSYSPVSPSSGVFLVVVGGAVFVGGGAAAAAPAGGAAPADAAPAEAKKEEKVEEEEEDDDMGFSLFD 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04856 119 MobiDBLite consensus disorder prediction 103 119 - -
Trre8g04856 119 Pfam 60s Acidic ribosomal protein 73 118 - -
Trre8g04856 119 PANTHER 60S ACIDIC RIBOSOMAL PROTEIN P3-1-RELATED 1 119 IPR044252 GO:0003735|GO:0005840
Trre8g04856 119 MobiDBLite consensus disorder prediction 81 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04856 Trre-Chr8 51727482 51728240 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04856 1 68 Cytoplasmic Ribosomal Protein Gene Family AT5G57290 64.706 6.39e-27 94.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04856 K02942 - gmx:100804776 79.3369