LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g04852	ATGTCAGAGACTAACGACCGCGCCGCCACCGTCACCGCCGGTGGTGGTTACCGGAGTACATTTTCAAGGTCAGTTTCATGGACTGACCGTTCACCTTCAAACAGAAAACCACCTCATGCGGCGGCTAAAAACAGACAGCTTCGTCCTCTTTCTATCAACAAACGTAGCATTGAAGAATGGCCAAGTGCTGGATCTGACGATCTTGGTGTTTGGCCACAAGCAGATACACCAAGAGGAAGAGGTTCAATCATTGGTTCAGAGTTTCAGTTCAAAAGAGACAAGTTAGCTTTTTATGACAAAGAATGTTCTAGAATTGCTGAACATGTGTACTTAGGAAGTGACACTGTTGCTAAGAATCATGAGCTTCTAAGACAAAATGGGATTACTCATGTGCTTAATTGTGTTGGATTTGTTTGTCCTGAATATTTCAAAAGTGAGTTTGTTTATAAAACTCTTTGGTTGCAGGATAGTCCAACAGAAGATATAACAAGTATTTTGTATGATGTTTTTGATTATTTTGAGGATGTTAGATTACAAGGTGGTCGTGTTCTTGTTCATTGTTGTCAAGGTGTTTCTAGATCAACTTCTTTGGTCATTGCTTATCTTATGTGGAGAGAAGGACAAAGCTTTGAAGATGCTTTTCATTATGTCAAGAATGCTCGTGGTGTTACAAATCCTAACATGGGTTTTGCTTGTCAACTTTTGATGTGTCAGAAAAGAGTGGTAAATGTAAATGCAAATTCAAATGGTAATGCTAATGTTATGCCTTCAAGTCCTAATTCTGTTCTTAGGATGTATAGAATGGCTCCTCATTCACCTTATGACCCTCTTCATGTGGTACCTAAAATGGTCGACAAGCCTTGTGCTAAGGCGCTCGATTCTCGTGGTGCTTTTATTGTTCATGTTCCTTCTGCTATATATGTTTGGATTGGTAAAAATTGTAGTTCTGTTATTTCTTGTAATGCACGATCTGCAGCTACGCAGGTTGTTCGTTATGAGAAAGCAAATGCTCCGATTCTTACCATTTGTGAAGGTGAAGAGCCAATGGAGTTTTGGGTTGCTCTTTCTAACCAGGAACTGGTGGAGAAGGAAAGAATGGAGACTGATGGTGATATGGGGATTCATCCTAGGAAAGTCGATGAGTACGATTTGGATTTTGGGATATTTCACAAAGCACTTGCTGGTGGTGTTGTTCCACCTTTTTCTGTGTCTAATACAGGCTCAGAAACTTTGCTTCCTGCTAGAGAAAATGGCTGGGGAAGACTAAGGAGGAAGATTGCTAATAGTATCATGAAAGGTTTGTTTACATCCTCCAAATGTTGTGATACATCCTCACCAAAAGATGAATTATTAAGGGAGAATGTGGAAGAAGATGAAAAACAACATTCAGTTGTTGATCATTCCTCAAAGCATCTTTCTGGTTCATCTAGTTACATTGAATATACTGTTGATCACAGCTCTGACAAGGCAAAAGATAGTCTTGCATTCATGGATCGCTTTGTTCCTAATGTTGGTTCGTCATTGCCACCAACACATCGAAAATCGGATTCTTTTCCTTTTTCTTTAAGTAACAGCCCAAAATTCAGTTCAAAGTCACCAACCCTTTCTCCCTCCAATTCTGATTGTGCTAGCTCCTTCACATTTTCGCCTGCGTCTACACATTGGTCTGATTTGTCATTCATGTCATCTCGGCAACCATCGCCTTCTTCTGGGCTTGAATCATCTGAACAACCCTTTTATCTTAATAAAGATGTATCTTTGTTAGAAAGATCCTCTTCACTTCGCAACGCTGCTGTCTCTTCATCTTCAGAGACACTTTCGGTTAATCACAGCGTGGTAGGGACAAACTCCTACAAAGGGCCTAACTCTAACCTCTCCATTGCGGAGCGCAGAGGGAGTAAACCGCCTCCTCAAATGTTCGTAACTTCTGTTAGCGAATCATTGCGTGCTCACAAAGTTCTGAAAAGGAAAAGGATTCTCTCATGTCTTGTGGAAGGTGGTGTAAGAGAAAAAATGTTAGAAAAATAA	2028	0.4043	MSETNDRAATVTAGGGYRSTFSRSVSWTDRSPSNRKPPHAAAKNRQLRPLSINKRSIEEWPSAGSDDLGVWPQADTPRGRGSIIGSEFQFKRDKLAFYDKECSRIAEHVYLGSDTVAKNHELLRQNGITHVLNCVGFVCPEYFKSEFVYKTLWLQDSPTEDITSILYDVFDYFEDVRLQGGRVLVHCCQGVSRSTSLVIAYLMWREGQSFEDAFHYVKNARGVTNPNMGFACQLLMCQKRVVNVNANSNGNANVMPSSPNSVLRMYRMAPHSPYDPLHVVPKMVDKPCAKALDSRGAFIVHVPSAIYVWIGKNCSSVISCNARSAATQVVRYEKANAPILTICEGEEPMEFWVALSNQELVEKERMETDGDMGIHPRKVDEYDLDFGIFHKALAGGVVPPFSVSNTGSETLLPARENGWGRLRRKIANSIMKGLFTSSKCCDTSSPKDELLRENVEEDEKQHSVVDHSSKHLSGSSSYIEYTVDHSSDKAKDSLAFMDRFVPNVGSSLPPTHRKSDSFPFSLSNSPKFSSKSPTLSPSNSDCASSFTFSPASTHWSDLSFMSSRQPSPSSGLESSEQPFYLNKDVSLLERSSSLRNAAVSSSSETLSVNHSVVGTNSYKGPNSNLSIAERRGSKPPPQMFVTSVSESLRAHKVLKRKRILSCLVEGGVREKMLEK	675

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g04852	675	ProSiteProfiles	Tyrosine specific protein phosphatases domain profile.	160	221	IPR000387	GO:0016311\|GO:0016791
	Trre8g04852	675	SUPERFAMILY	(Phosphotyrosine protein) phosphatases II	93	243	IPR029021	-
	Trre8g04852	675	ProSiteProfiles	Dual specificity protein phosphatase domain profile.	101	243	IPR020422	GO:0006470\|GO:0008138
	Trre8g04852	675	Pfam	Gelsolin repeat	284	352	IPR007123	-
	Trre8g04852	675	ProSitePatterns	Tyrosine specific protein phosphatases active site.	185	195	IPR016130	GO:0016311\|GO:0016791
	Trre8g04852	675	SMART	VILL_6	267	358	IPR007122	GO:0051015
	Trre8g04852	675	Gene3D	Protein tyrosine phosphatase superfamily	85	242	IPR029021	-
	Trre8g04852	675	MobiDBLite	consensus disorder prediction	1	33	-	-
	Trre8g04852	675	Gene3D	Severin	264	362	IPR029006	-
	Trre8g04852	675	SMART	dsp_5	101	240	IPR020422	GO:0006470\|GO:0008138
	Trre8g04852	675	MobiDBLite	consensus disorder prediction	1	48	-	-
	Trre8g04852	675	SUPERFAMILY	Actin depolymerizing proteins	258	358	-	-
	Trre8g04852	675	CDD	DSP	102	236	-	-
	Trre8g04852	675	PANTHER	MKPA PROTEIN	17	650	-	-
	Trre8g04852	675	Pfam	Dual specificity phosphatase, catalytic domain	109	239	IPR000340	GO:0008138\|GO:0016311

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g04852	Trre-Chr8	51707888	51710516	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g04852	28	137	Protein tyrosine phosphatase (PTP) family	AT3G55270	44.882	5.05e-26	112

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g04852	-		-	tpra:123917031	1197.19