Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04830 ATGTTAGAAACTGGTGCAGCACGTGATTCTGAGTTAAGTTTAGAGACTGTCAATTCAACTCAGCGAAGAAGTTCAATGAGCAGTGAAAGCATTTGCAGCACCAGTTTTAGTCGTCTATCATTCGACCTACTTCCGTCTTCTCCGGAAAGTCTCTCCATCAAGCCTCACCGTTCTTCCGACTTCGCTTACTCCGCTATCCGTTCCGCCGCATTCCGTCGCAAATCAGCGCTTACTTTCCGTGACTTCCATCTCCTCCGCCGTATCGGTGCCGGCGACATTGGAACTGTTTACCTCTGCCGTCTCAGAAACGGAAATGACAAATTCGAAAGCTGTGAAAAAGACAACGCGTGTTGCTTGTACGCGATGAAGGTTGTTGATAAAGACGCTGTCGCATTGAAGAAGAAATCACAGAGAGCTGAAATGGAGAAAAAGATTCTGAAAATGCTTGATCATCCTTTTCTTCCTACACTCTACGCTGAGTTTGAAGCTTCTCATTTCTCTTGCATTGTTATGGAGTTTTGTTCCGGTGGTGACTTGCATTCCCTACGCCACAAACACCCTCATAACCGTCTTCCTCTTCCTTCCGCCAGATTTTATGCGGCTGAGGTATTGGTGGCTATGGAGTACCTTCACATGTTAGGAATCATTTACAGAGATCTAAAGCCTGAGAATGTTTTAGTTAGATCCGACGGTCATATCATGCTTTCAGATTTTGATCTTTCACTTTGCTCTGATGCAACCCCTGCCGTTGAATCATCAGATATTTTACAAGATTCCGCGTTTTCATCAACATTACCCTACACTCGCTCGCGTTCTTTTCCTACTCCATTCACTTGCTTTTCAAACCGGTTGTTTAAGTCACGTAAGGTTCAAACCATTCAACCGAACCGGCTTTTCGTTGCTGAACCGGTTTCTGCCCGGTCTTGCTCTTTTGTTGGAACACATGAGTATGTCTCACCGGAAGTAGCCGCCGGAAACTCTCATGGAAACGCCGTAGACTGGTGGTCGTTTGGGATATTTATCTATGAGCTTATATATGGGTATACTCCGTTTGCGGCTCCATCGAATAAAGCTACGCTGCGTAACATCTTAAAAAAACCTTTAACCTTTCCCACAGCTAGGGTTGGGAATAGGCCAGGCCGGCCTACAGGGGCCTACGGCCTAGCCTACATAGGCTCAGGCCAGGCTCATACTTGGCAAAGCCTTGTTCGGCCTAGCCTATTCCCAACCCTACCCACAGCAACGCCTTCGAGCACGCTTGAATTCCACGCGCGTGACTTAATATCCGGGTTGCTTAACAAAGATCCAGCTCAACGACTCGGGTCAAAGCGCGGCGCGGCTGACGTAAAGAAACACCCGTTTTTCAAAGGGATTAATTTGGCGCTGATTCGTATGTTGACGCCGCCCGAAGTTCCTGGCTCAAGAAGGCCTAAAACGACGCCGTTGTATAGTGGGAAGAGTAATGGTTGTAGTAAACGGCAACAAACGGCGTCGTTTGATATTTTCTTTTAA 1512 0.4702 MLETGAARDSELSLETVNSTQRRSSMSSESICSTSFSRLSFDLLPSSPESLSIKPHRSSDFAYSAIRSAAFRRKSALTFRDFHLLRRIGAGDIGTVYLCRLRNGNDKFESCEKDNACCLYAMKVVDKDAVALKKKSQRAEMEKKILKMLDHPFLPTLYAEFEASHFSCIVMEFCSGGDLHSLRHKHPHNRLPLPSARFYAAEVLVAMEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDATPAVESSDILQDSAFSSTLPYTRSRSFPTPFTCFSNRLFKSRKVQTIQPNRLFVAEPVSARSCSFVGTHEYVSPEVAAGNSHGNAVDWWSFGIFIYELIYGYTPFAAPSNKATLRNILKKPLTFPTARVGNRPGRPTGAYGLAYIGSGQAHTWQSLVRPSLFPTLPTATPSSTLEFHARDLISGLLNKDPAQRLGSKRGAADVKKHPFFKGINLALIRMLTPPEVPGSRRPKTTPLYSGKSNGCSKRQQTASFDIFF 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04830 503 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Trre8g04830 503 SMART serkin_6 82 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04830 503 FunFam protein kinase PINOID 2 80 173 - -
Trre8g04830 503 FunFam protein kinase PINOID 174 242 - -
Trre8g04830 503 Gene3D Transferase(Phosphotransferase) domain 1 174 242 - -
Trre8g04830 503 Gene3D Transferase(Phosphotransferase) domain 1 418 472 - -
Trre8g04830 503 MobiDBLite consensus disorder prediction 1 21 - -
Trre8g04830 503 ProSiteProfiles Protein kinase domain profile. 82 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04830 503 PANTHER FLIPPASE KINASE 1-RELATED 392 475 - -
Trre8g04830 503 Gene3D Phosphorylase Kinase; domain 1 80 173 - -
Trre8g04830 503 MobiDBLite consensus disorder prediction 469 489 - -
Trre8g04830 503 Gene3D Transferase(Phosphotransferase) domain 1 307 372 - -
Trre8g04830 503 SUPERFAMILY Protein kinase-like (PK-like) 64 472 IPR011009 -
Trre8g04830 503 Pfam Protein kinase domain 308 455 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04830 503 Pfam Protein kinase domain 82 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04830 Trre-Chr8 51592761 51594940 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04830 9 502 AGC Kinase Gene Family AT2G34650 59.046 0.0 560
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Trre8g04830 Pkinase 4.4e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04830 - - vun:114177159 707.212