Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04825 ATGATATTAATCTTTTTGAAGCCAAATTTGAAGATTCGTGCATCTCAGGAAAAAAAAGATTTGAAATCCACACCAAAGAAATCAAACAAACACCATCAGTATAAGCATTCAAGGGGACCAGCCATTGTCAAGCTGAATCCTGATGGAAGTTATGGTTGGGAGAAGATTGTAACTAGAGCTGGTGCAGCCCATACAAGACCTCAAGTCATGCATTTTCCTAAGCAATTTTCGAGATTATTTTTGGGAAAAAAACAAAACATAATGTTGGTCCAAGCTGAGGCACGAGATACATTCTCTTGCAAGATTAAGACAGCAGCAAGGAATAGAGATGAAAAATACATAACAAAAGAGTGGACCAAATTCGTGAGAAGAAACAACCTCCAGGTTGGAGACAAGCTCATTTTCACTCTTCAGAACCAACCAACAAAGCTCCTGATTCAGATCATCCGTTGTAGTGTGCACGACTAA 468 0.3889 MILIFLKPNLKIRASQEKKDLKSTPKKSNKHHQYKHSRGPAIVKLNPDGSYGWEKIVTRAGAAHTRPQVMHFPKQFSRLFLGKKQNIMLVQAEARDTFSCKIKTAARNRDEKYITKEWTKFVRRNNLQVGDKLIFTLQNQPTKLLIQIIRCSVHD 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04825 155 SMART B3_2 54 152 IPR003340 GO:0003677
Trre8g04825 155 Gene3D - 11 152 IPR015300 -
Trre8g04825 155 MobiDBLite consensus disorder prediction 16 40 - -
Trre8g04825 155 Pfam B3 DNA binding domain 69 150 IPR003340 GO:0003677
Trre8g04825 155 SUPERFAMILY DNA-binding pseudobarrel domain 66 150 IPR015300 -
Trre8g04825 155 CDD B3_DNA 70 150 IPR003340 GO:0003677
Trre8g04825 155 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 51 151 IPR044837 -
Trre8g04825 155 ProSiteProfiles B3 DNA-binding domain profile. 55 152 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04825 Trre-Chr8 51551171 51552070 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Trre8g04825 B3 1.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04825 - K02986 tpra:123885214 88.1965