Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04822 ATGCAGAGTCAAATTGTGTGTAATGGTTGTAGGAGCATGTTGCTTTACCCTAGAGGGGCAACCAATGTTTGTTGTGCATTGTGCAACACAATCACCCCTGTTCCTCCACCTGGGATGGATATGGCTCAACTATATTGTGGAGGCTGTAGGACATTGCTAATGTACACACGCGGGGCTACAAGTGTTAGGTGTTCCTGCTGTCACACTGTAAACCTTGCTCCAGCATCTAATCAAGTGGCCCATGTCCCTTGCGGGAACTGCCGAACAACACTCATGTATCCTTATGGAGCTCCTTCAGTCAAATGTGCTGTTTGTCACTATATTACTAATATCAATATGTCCAATGGAAGACTTCCAATTCCTGGTCAAAGACCTAATGGGACAACCAACTCGGGAACGTTGCCTTCTACTTCAACATCCATGCCTCAATCTCAGAGCCAAACAGTGGTGGTAGAAAATCCAATGTCTGTCGATTCAAGTGGGAAATTGGTGAGCAATGTTGTTGTTGGCGTTACAACAGATAAGAAATAA 531 0.4482 MQSQIVCNGCRSMLLYPRGATNVCCALCNTITPVPPPGMDMAQLYCGGCRTLLMYTRGATSVRCSCCHTVNLAPASNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNINMSNGRLPIPGQRPNGTTNSGTLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04822 176 MobiDBLite consensus disorder prediction 118 145 - -
Trre8g04822 176 NCBIfam zinc finger domain, LSD1 subclass 4 33 IPR005735 -
Trre8g04822 176 NCBIfam zinc finger domain, LSD1 subclass 81 110 IPR005735 -
Trre8g04822 176 NCBIfam zinc finger domain, LSD1 subclass 43 72 IPR005735 -
Trre8g04822 176 Pfam LSD1 zinc finger 84 108 IPR005735 -
Trre8g04822 176 Pfam LSD1 zinc finger 46 70 IPR005735 -
Trre8g04822 176 Pfam LSD1 zinc finger 7 31 IPR005735 -
Trre8g04822 176 PANTHER PROTEIN LSD1 2 175 IPR040319 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04822 Trre-Chr8 51527170 51530645 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Trre8g04822 zf-LSD1 1.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04822 - - gmx:100776394 332.798