Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04820 ATGGAAAATACATTTGAATCTTTCAGCAGTCCACAACATAAAAAGATATCATCCAGATGGGATCCATTCGAACCATGTCGGCCTATAATCGATGAAGCACCTGTGTTTTATCCTACTTATGAGGAGTTTGAAGACACACTTGGTTACATAGCTAAGATACGCCCTCTAGCCGAACCCTATGGTATATGTAAAGTTGTTCCCCCAACTTGCTGGGTTCCACCTTGCCCGCTTAAGGAGAAAGAGATATGGGAAAATGCTAAATTTCCGACCCGTATTCAGCAAGTTGATTTACTTCAGAACCGCGAGCCAATGAGGAAGAAAAGTAGGGGAAGGAAACGAAAACGTGGAAAGCCTTCAAAGATGGGATCATGTAGTAGGAAAACTAGAAATTCATGTTCTGAAGCTGATGCTAGTACTTCTGACTCTGATGATAAGTTTGGATTCCAATCAGGACCAGACTTCACACTTAAAGAATTTCGACAATACGATAATTCTTTTAAAGATTGCTACTTCGGATTGAATGATTCCGAAGATGGTAAAGGTAGTCACCATGAGAAACGGAAGCCATCTGAGGAGGAAATTGAAGGTGAATACTGGCGAATAATAGAGCAACCGACTGATGAGGTCGAGGTCTATTATGGAGCTGACTTGGAAACCGGAGCACTTGGAAGCGGTTTTCCTAAGACGTCATCCTTAACTAAAAGTGATTCAGATTTGTATGCCAAGTCTGGCTGGAATCTGAATAACTTTGCACGTTTGCCAGGTTCAGCATTATGTTTCGAAGGGAGCGACATATCTGGAGTCTCAGTTCCATGGCTGTATGTTGGAATGTGCTTCTCCTCATTTTGCTGGCATGTTGAAGATCATCACCTCTATTCACTTAATTATCTGCATTGGGGTGACCCAAAAGTATGGTATGGTATACCTGGGAGCCATGCTTCAGCTATGGAAGACGCAATGAGGAAACACTTGCCTGATTTGTTTGAAGAACAACCAAATCTACTAAATGAGTTGGTGACTCAGTTCTCTCCTTCGATACTTAAGTCAGAGGGGGTGCCCGTGTATCGCACTGTCCAGCGTTCCGGGGAATTTGTTATCACTTTTCCACGGGCATACCACTGTGGCTTCAGCTGCGGCTTCAACTGTGCAGAGGCTGTGAACGCGGCTCCATATGATTGGTTTGTGCATGGTCAGAATGCTGCTGAGATTTACAGTCTCCAATGCCGTAAGACATCACTGTCCCATGATAAGTTGTTATTCGGATCTGCTAAGGAAGCTGTACATGCCCTTGCCGAGACAACTCTTCATGGCAAAGAAAATCAAAAATATTTAAATTGGAGAAATGCTTGTGGGAAAGATGGAGTTCTCACCAATGCAGTTAAGACAAGAATAGTGATGGAAAAAGAGAGGCTTGATCAGCTTCCGAATCATTTAAAAATGCTGAAGATGGACAATGACTTCGATTCGGTTGAAGAAAGGGAATGCTTCTCTTGTTTATATGACTTGCACCTATCCGCTGTTGGTTGCGAGTGCTTTCCAGACAGATATTCTTGTCTTAGACATTTCAAGCTGTTTTGCTCGTGCGAAATGGATAGAAGATTTGTTCTGTTCCGTTATACTATGAACAAGCTAAGTACATTGGTTGAAGCCTTAGAAGGAAAACCACGTGCAATAGAAGCGTGGGAAACCCAAAACAATGGAGGCGTTTCTGCTATTGCCGAGGATGCTTGCATGGATGAACAAGCTATGGAGAGAGAGATGTGCAAAACCAAGGATTGCGAAGAAGGGAAAAGCCCGCCTTCTTGTCCAGGAACTAATGAGAGGTCTAGCAGTCCTTACAGTCACATTTCTTCTGAGTTGGCCATGGACAACGCAGTTAAGGAGGATAAACCTGATAAACCTTCGCTAAATGTAGCAGATGGTTTTAAATTGTTTGGTGTCAATCTACAGATGAATTCAGATTCAGGACAGAAACTCAATAGTTCGGTTGAAACTGGAGTTCTAGACACCTCTAATACGAGTATGTCTTTGGCAAACCAAAGCTCTCCAATGCAAAAGTTTAGTATTTCTGCAGAGCTTGTAAGTTTGGGAACCGTGCTGTATGGAAATCATTGGTTCAGTAATCAAGCAATATATCCAAAAGGATTCAAAAGTCGTGTCAAGTTCTTTAGCATTCTTGATCCAACAAGCATCTGTTACTATGTTTCTGAAGTCATTGACGGTGGATTTCTTGGGCCTTTTTTTAGGGTTACCTTGGAAGAACATCCAAAAGAGGTTTTCACAAATACTTCAGTAGATAAGTGTTGGGAAGCAGTTATTGACAGACTAAATTGTGAAATCAATCGGCGCAGGAGTCTCGGTGAACTAAACATGCCCCCCTTGGAACTACTGCAAAACATCAACGGTCATAAAATGTTTGGATTCTTTTCGCCATCCATTGTTCAGTCCATTGAAGCTCAAGATCCCAATCATAAATGTGTAGCGTACTGGGATCACAAACAAGTTAATTTTGGATCTTCAAGCAAAGCCATTGATGACTCTAAGTTAACTTGTGGTTCAAGTAATAGCTCTCTAGGTGACTTCAAGACCAAACTTTTTGGTGTCGATTTGATAAAGGTGGAGGAAGATGACATTGGAGAAAGTTCTCATTCGTTTGAAGAGATGAAGTTGATTCTAGAAGGATTCCTAAAAAAGGCAAGTCCTGATGAGTTAAGAGCAATGCGTACGTTATTTAGCTCTAATGCAGAATTGACCCAGTGGAGACCGACATTGATGACGCTGATAGAGGAAATCCAGAAAGTTTGTCCATAA 2811 0.4187 MENTFESFSSPQHKKISSRWDPFEPCRPIIDEAPVFYPTYEEFEDTLGYIAKIRPLAEPYGICKVVPPTCWVPPCPLKEKEIWENAKFPTRIQQVDLLQNREPMRKKSRGRKRKRGKPSKMGSCSRKTRNSCSEADASTSDSDDKFGFQSGPDFTLKEFRQYDNSFKDCYFGLNDSEDGKGSHHEKRKPSEEEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKTSSLTKSDSDLYAKSGWNLNNFARLPGSALCFEGSDISGVSVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGIPGSHASAMEDAMRKHLPDLFEEQPNLLNELVTQFSPSILKSEGVPVYRTVQRSGEFVITFPRAYHCGFSCGFNCAEAVNAAPYDWFVHGQNAAEIYSLQCRKTSLSHDKLLFGSAKEAVHALAETTLHGKENQKYLNWRNACGKDGVLTNAVKTRIVMEKERLDQLPNHLKMLKMDNDFDSVEERECFSCLYDLHLSAVGCECFPDRYSCLRHFKLFCSCEMDRRFVLFRYTMNKLSTLVEALEGKPRAIEAWETQNNGGVSAIAEDACMDEQAMEREMCKTKDCEEGKSPPSCPGTNERSSSPYSHISSELAMDNAVKEDKPDKPSLNVADGFKLFGVNLQMNSDSGQKLNSSVETGVLDTSNTSMSLANQSSPMQKFSISAELVSLGTVLYGNHWFSNQAIYPKGFKSRVKFFSILDPTSICYYVSEVIDGGFLGPFFRVTLEEHPKEVFTNTSVDKCWEAVIDRLNCEINRRRSLGELNMPPLELLQNINGHKMFGFFSPSIVQSIEAQDPNHKCVAYWDHKQVNFGSSSKAIDDSKLTCGSSNSSLGDFKTKLFGVDLIKVEEDDIGESSHSFEEMKLILEGFLKKASPDELRAMRTLFSSNAELTQWRPTLMTLIEEIQKVCP 936
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04820 936 ProSiteProfiles FYR domain FYRN motif profile. 683 741 IPR003888 GO:0005634
Trre8g04820 936 SMART fyrn_3 697 741 IPR003888 GO:0005634
Trre8g04820 936 Pfam JmjC domain, hydroxylase 272 387 IPR003347 -
Trre8g04820 936 Gene3D Cupin 18 389 - -
Trre8g04820 936 MobiDBLite consensus disorder prediction 95 147 - -
Trre8g04820 936 MobiDBLite consensus disorder prediction 590 615 - -
Trre8g04820 936 ProSiteProfiles JmjC domain profile. 242 405 IPR003347 -
Trre8g04820 936 PANTHER LYSINE-SPECIFIC DEMETHYLASE 28 661 - -
Trre8g04820 936 Pfam C5HC2 zinc finger 495 546 IPR004198 -
Trre8g04820 936 Gene3D - 689 827 - -
Trre8g04820 936 SMART fyrc_3 747 843 IPR003889 GO:0005634
Trre8g04820 936 SMART cupin_9 239 405 IPR003347 -
Trre8g04820 936 Pfam F/Y rich C-terminus 745 832 IPR003889 GO:0005634
Trre8g04820 936 SMART JmjN_1 32 73 IPR003349 -
Trre8g04820 936 MobiDBLite consensus disorder prediction 123 146 - -
Trre8g04820 936 Pfam F/Y-rich N-terminus 692 738 IPR003888 GO:0005634
Trre8g04820 936 SUPERFAMILY Clavaminate synthase-like 155 424 - -
Trre8g04820 936 ProSiteProfiles FYR domain FYRC motif profile. 743 833 IPR003889 GO:0005634
Trre8g04820 936 MobiDBLite consensus disorder prediction 105 122 - -
Trre8g04820 936 Pfam jmjN domain 34 67 IPR003349 -
Trre8g04820 936 ProSiteProfiles JmjN domain profile. 33 74 IPR003349 -
Trre8g04820 936 FunFam Putative lysine-specific demethylase JMJ16 689 827 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04820 Trre-Chr8 51514057 51518203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04820 2 871 JUMONJI Transcription Factor Family AT1G30810 53.036 0.0 852
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre8g04820 JmjC 1.3e-45 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04820 K11446 - csin:114265853 1016.14