Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04817 ATGGCTTTATTTTCTCATTCACATTTTCATTTTTTTTCCTTATTAATAATCCTTATTTTCCACTTTGATTTCAACAACCTTTTGTTTGTTGTATCATCAACCACTCTAAGCATCACCACAGACAAAGAAGCCTTAATCTCATTAAAATCTCAATTAAGTATTAATGACACTTCTATTTCTCACCCATTATCCTCTTGGAGCCATAATTCATCTCCTTGCAATTGGACTGGTGTCCTATGTGACAAGCATAACCAAAGAGTGATTGGTTTAGATCTTTCAGGCCTTGGACTCTCAGGTAACTTAAGTCCTTATATAGGTAACTTGTCCTCTCTTCAATCCCTACAATTGCAGTATAACCAGATCACAGGAATGATTCCTGACCAAATTAGCAATCTATACAGTTTGAGAGTTCTTAATATAAGCTCTAATAGATTAGAAGGAGTGCTTCCTTCAAACCTTACATGCTTAAAGGAGCTTAAGATTCTTGATTTGTCCTCAAACAAGATTGTAAGTAGAATTCCCAAAGACATCAGCAGCTTGAAAAAGCTGCAGGCCTTGAAACTTGGAAGGAATAGCCTCTATGGTACAATTCCAGCATCTCTAGGAAATATTTCTTCTTTGAAAAATATAAGTTTTGGCACCAACTCTCTTAGTGGCTGGATTCCTAGTGAATTAGGTAAGTTACATAATTTAATTGAGCTTGATCTTACTCTTAACAATCTTACCGGAACTGTTCCACCAGTAATATACAATTTGTCTTCCCTTGTTAACTTGGCCTTAGCTGCAAACTCCTTTTGGGGTGAGATACCTTATGATGTTGGTCATAAACTTCCCAAACTACTAGTTTTCAATTTCTGCTTCAATAAGTTCACAGGTAGAATTCCAGGGTCTTTGCACAACCTCACAAACATTAGGGTCATTCGTATGGCTTATAACCGTTTGGAAGGAACAGTTCCACCCGGTTTAGGAAATCTTCCATTTCTTCACATGTATAATATTGGCTATAACAGGATAGTCACCTCAGGAGTCAATGGTTTGGACTTCATTACTTCAATGACAAATAGCACTCACTTGAACTTTCTAGCAATTGATGGAAATATGCTTGAAGGTGTGATTCCTGAAACCATTGGCAATCTCTCAAAGGAACTCTCAAACTTATACATGGGAGGGAATCGTTTCAATGGAAGCATACCATCTTCCATTGGTCGTCTTAGTGGCTTGAAGTTGTTAAACTTGAGCTACAATTCAATCAGTGGTGAGGTTCCAAAGGAGTTAGGCAAGTTAAAGGAACTAGAAGAGCTATATCTTGATGGAAATAAGATATCGGGATCTATTCCGAACTCTCTTGGTAAGCTACTAAACTTAAACAAGATTGATTTGTCAAGAAATGAACTTGTAGGTAAAATACCAATCAGTTTTGGTAATTTGCAAAACCTGATTTGCATGGACTTATCTTGCAACAAACTCAATGGAAACATACCTGTGGAAATCCTCAACCTACCATCTTTGAGCAATGTTTTAAACTTATCAAAGAATTTTTTGAGCGGACCGATACCTCAAGTTGGGAAATTGCCTACCATTGCAACTATTGACTTTTCCAACAACCAATTGTATGGAAACATCCCAAGCTCATTCAGCAGTTGTTTGAGCTTGGAGAAATTGTTTTTGACCAACAATTTGCTTTCAGGTTCCATTCCAAAAGCTCTTGGAGATGTGAGAGGCTTGGAAACTTTGGACTTATCCTCCAACCTACTCTCAGGATCCATTCCTATTGAACTTCAAAATTTGCATGTCCTAAAGCTTTTAAACCTCTCTTATAATGATTTAGAAGGAGCCATTCCAAGTGGTGGGATTTTCCAAAATCTCTCTGATGTCCACTTAGAAGGCAATAAAAAACTATGCTTGAATTTTGCATGTGTGCCTCAAGTCCATAGAAGAACACATGAGAGATTATATATCATCATAGCTGTTGTGTTAACAATGGGACTATGTCTCACAATTGGCTTGCTACTATATATGAAGTATACAATGGTTAAGGTAACAGCAACAACAGCGTCTGGACAGCTAAAGCATCAGGCTCCTATGATCTCTTATGACGAGCTTCGCTTGGCAACTGAGGAGTTCAGCCAAGAACATTTAATAGGAATTGGGAGTTTTGGATCAGTGTATAAAGGCTATCTAAGTCAGGGAAATATTGTTGCGGTGAAAGTGCTTGACACTCTAAGAACAGGTTCTTTAAAGAGTTTCTTTGCAGAGTGTGAGGCTATGAAGTATTCAAGGCATAGAAATCTGGTTAATCTCATCACATCATGTTCTAGTGTTGACTTTAAAAACAATAATTTTCTGGCTTTGGTGTATGAGTATTTAAATAATGGGAGCTTGGAAGATTGGATTAAGGGGAGGAGAAAGTATGAAAATGGAAATGGCTTGAACCTTATGGAGAGAGTGAATATAGCTATAGATGTTGCTTGTGCATTAGATTACCTACACAATGATAGTGAAACTCCTATTGTGCACTGTGATCTAAAACCAAGCAATATTCTCCTGGATGAAGATATGACTGCAAAGGTTGGTGACTTTGGTTTGGCTAGGTTGCTGATTCAAAGATCTACTAATCAAGTTTCTATCAGCTCCACTCATGTTCTAAGGGGTTCAATTGGTTACATACCTCCAGAGTATGGATGGGGAGAGAAACCTTCAACAGCAGGAGATGTATATAGTTTTGGGATAGTGTTACTAGAGCTCTTCTCTGGAAAAAGTCCACAAGATGCTTGCTTCACAGGAGGCCTGAGCATAACAAAATGGGTGGAATCAGCACTCAAAAACAAGAATGTTCAAGTCATTGACCCGCAGCTGCTATCTCTCGTTTTTCATGATGATCCTGCTAGAAAAGACCCCAATCTACTAATCCATTGTGTGGATGCAATTATGGGAATTGGCATGTCTTGCACCGTAGACAATCCAGATGACCGCATTGGCGTTAGAGTTGCTGTTCGCCAACTAAAAGCTGCCTGGGACTCTTATGAAAGAAAGAGTCTCATATGA 3045 0.3826 MALFSHSHFHFFSLLIILIFHFDFNNLLFVVSSTTLSITTDKEALISLKSQLSINDTSISHPLSSWSHNSSPCNWTGVLCDKHNQRVIGLDLSGLGLSGNLSPYIGNLSSLQSLQLQYNQITGMIPDQISNLYSLRVLNISSNRLEGVLPSNLTCLKELKILDLSSNKIVSRIPKDISSLKKLQALKLGRNSLYGTIPASLGNISSLKNISFGTNSLSGWIPSELGKLHNLIELDLTLNNLTGTVPPVIYNLSSLVNLALAANSFWGEIPYDVGHKLPKLLVFNFCFNKFTGRIPGSLHNLTNIRVIRMAYNRLEGTVPPGLGNLPFLHMYNIGYNRIVTSGVNGLDFITSMTNSTHLNFLAIDGNMLEGVIPETIGNLSKELSNLYMGGNRFNGSIPSSIGRLSGLKLLNLSYNSISGEVPKELGKLKELEELYLDGNKISGSIPNSLGKLLNLNKIDLSRNELVGKIPISFGNLQNLICMDLSCNKLNGNIPVEILNLPSLSNVLNLSKNFLSGPIPQVGKLPTIATIDFSNNQLYGNIPSSFSSCLSLEKLFLTNNLLSGSIPKALGDVRGLETLDLSSNLLSGSIPIELQNLHVLKLLNLSYNDLEGAIPSGGIFQNLSDVHLEGNKKLCLNFACVPQVHRRTHERLYIIIAVVLTMGLCLTIGLLLYMKYTMVKVTATTASGQLKHQAPMISYDELRLATEEFSQEHLIGIGSFGSVYKGYLSQGNIVAVKVLDTLRTGSLKSFFAECEAMKYSRHRNLVNLITSCSSVDFKNNNFLALVYEYLNNGSLEDWIKGRRKYENGNGLNLMERVNIAIDVACALDYLHNDSETPIVHCDLKPSNILLDEDMTAKVGDFGLARLLIQRSTNQVSISSTHVLRGSIGYIPPEYGWGEKPSTAGDVYSFGIVLLELFSGKSPQDACFTGGLSITKWVESALKNKNVQVIDPQLLSLVFHDDPARKDPNLLIHCVDAIMGIGMSCTVDNPDDRIGVRVAVRQLKAAWDSYERKSLI 1014
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04817 1014 ProSiteProfiles Protein kinase domain profile. 708 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04817 1014 Pfam Leucine rich repeat 550 609 IPR001611 GO:0005515
Trre8g04817 1014 Pfam Leucine rich repeat 110 169 IPR001611 GO:0005515
Trre8g04817 1014 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515
Trre8g04817 1014 CDD STKc_IRAK 714 991 - -
Trre8g04817 1014 ProSitePatterns Protein kinases ATP-binding region signature. 714 736 IPR017441 GO:0005524
Trre8g04817 1014 Pfam Leucine rich repeat N-terminal domain 40 81 IPR013210 -
Trre8g04817 1014 SUPERFAMILY L domain-like 41 338 - -
Trre8g04817 1014 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 238 344 - -
Trre8g04817 1014 FunFam Receptor protein kinase CLAVATA1 37 198 - -
Trre8g04817 1014 FunFam LRR receptor-like serine/threonine-protein kinase EFR 345 646 - -
Trre8g04817 1014 SMART serkin_6 708 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04817 1014 SUPERFAMILY L domain-like 383 634 - -
Trre8g04817 1014 ProSiteProfiles Leucine-rich repeat profile. 158 181 IPR001611 GO:0005515
Trre8g04817 1014 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 789 1013 - -
Trre8g04817 1014 SMART LRR_sd22_2 156 182 - -
Trre8g04817 1014 SMART LRR_sd22_2 108 134 - -
Trre8g04817 1014 SMART LRR_sd22_2 228 254 - -
Trre8g04817 1014 SMART LRR_sd22_2 428 457 - -
Trre8g04817 1014 SMART LRR_sd22_2 572 593 - -
Trre8g04817 1014 Gene3D Transferase(Phosphotransferase) domain 1 789 1012 - -
Trre8g04817 1014 Pfam Protein kinase domain 709 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04817 1014 Gene3D Phosphorylase Kinase; domain 1 687 788 - -
Trre8g04817 1014 Gene3D Ribonuclease Inhibitor 345 641 IPR032675 -
Trre8g04817 1014 SMART LRR_typ_2 301 325 IPR003591 -
Trre8g04817 1014 SMART LRR_typ_2 476 500 IPR003591 -
Trre8g04817 1014 SMART LRR_typ_2 596 621 IPR003591 -
Trre8g04817 1014 SMART LRR_typ_2 572 595 IPR003591 -
Trre8g04817 1014 SMART LRR_typ_2 156 180 IPR003591 -
Trre8g04817 1014 SMART LRR_typ_2 404 427 IPR003591 -
Trre8g04817 1014 SMART LRR_typ_2 108 131 IPR003591 -
Trre8g04817 1014 SMART LRR_typ_2 228 252 IPR003591 -
Trre8g04817 1014 SMART LRR_typ_2 132 155 IPR003591 -
Trre8g04817 1014 SMART LRR_typ_2 428 452 IPR003591 -
Trre8g04817 1014 FunFam LRR receptor-like serine/threonine-protein kinase EFR 679 788 - -
Trre8g04817 1014 PANTHER OS04G0122200 PROTEIN 226 996 - -
Trre8g04817 1014 Gene3D Ribonuclease Inhibitor 37 100 IPR032675 -
Trre8g04817 1014 Gene3D Ribonuclease Inhibitor 101 344 IPR032675 -
Trre8g04817 1014 SUPERFAMILY Protein kinase-like (PK-like) 690 1001 IPR011009 -
Trre8g04817 1014 ProSitePatterns Serine/Threonine protein kinases active-site signature. 837 849 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04817 Trre-Chr8 51499274 51502758 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04817 40 1012 Receptor kinase-like Gene Family AT3G47570 40.704 0.0 675
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre8g04817 Pkinase 1.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04817 - - gmx:100783512 1529.23