Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04816 ATGGCTTTGCTTTCTCATTCACATCTTCATATTTTTTCCTTATTAATGATCCTTATTATCCACTTTGATTATAACAACCTTGTGTTTGTTGTATCATCAACCACTCTAAGCATCACCACAGACAAAGAAGCCTTAATCTCATTAAAATCTCAATTAAGTATTAATGACACTTCTAGTTCTCACCCATTATCCTCATGGAGCCATAATTCATTTCCTTGCAATTGGACTGGTGTTCTATGTGACAAGCATAACCAAAGAGTCACTGGCCTGGACCTTTCAGGCTTTGGATTATCAGGTAACTTAAGTCCTTATATAGGCAACATGTCCTCTCTTCGGTCCCTCCAATTGCAGGATAACCAGATCACAGGAATGATTCCTGACCAAATCAGCAATCTATACAGTTTGAGAGTTCTTAATATAAGCTCTAATAGACTAGAAGGAGTACTTCCTTCAAACCTTACATGCTTAAATGAGCTTCAGATTCTTGATTTGTCCTCAAACAAGATTGTAAGCAGAATTCCTAAAGACATCAGCAGCTTGAAAAATCTGCAGGTGTTGAAACTTGGAAGGAATAGCTTCTATGGTACAATTCCACAATCTCTAGGAAATATTTCTTCTCTAAAGAATATAAGTTTTGGCACCAACTCTCTTAGTGGATGGATTCCTAGTGAATTAGGTAAGTTACATAATTTAATTGCGCTTGATCTCACTCTTAACAATCTTACTGGAACTGTTCCACCAGTAATATACAATTTGTCTTCCCTTGTTAGCTTGGCCTTAGCTGCAAACTCCTTTTGGGGTGAGATACCTTATGATGGTCATAAACTTCCAAAACTACTAATTTTCAATTTCTGCTTCAATAAGTTCACAGGTAGAATTCCAGGGTCTTTGCACAACCTCACAAACATTAGGGTCATTCGTATGGCCTCTAACCGTTTGGAAGGAACAGTTCCACCCGGTTTAGGAAATCTTCCATTTCTTCACATGTATAATATTGGCTATAACAGGATAGTCACCTCCGGAGTCAATGGTTTGGACTTCATTACTTCATTGACAAATAGCACTCGCTTGAAATTTCTAGCAATTGATGGAAATATGCTTGAAGGCATGATTCCTGAAACCATTGGCAATCTCTCAAAGGAACTCTCAAACTTATACATGGGAGGGAATCGTTTCAATGGAAGCATACCATCTTCCATTGGTCGTCTTAGTGGCTTGAAGTTGTTAAACTTGAGCTACAATTCAATCAGTGGTGAGGTTCCAAAGGAGTTAGGCCAGTTAGAGGAACTAGAAGAGCTTTATCTTGATGGAAATAAGATATCAGGATCTATTCCAAACTCTCTTGGTAATCTACTAAAGTTAAACAACATTGATTTGTCAAGAAATGAACTTGTAGGTAAAATACCAATCAGTTTTGGTAATTTGCAAAACCTAATTTACATGGACTTATCTAGCAACAAACTCAATGGAAGCATACCTGTGGAAATCCTCAACCTACCAACTTTGAGCAATGTTTTGAACTTATCAAAGAATTTTTTGAGCGGACCGATACCTCAAGTTGGGAAATTGCCTACCATTGCAACTATTGACTTTTCCAACAACCAATTGTATGGAAACATCCCAAGCTCATTCAGCAGTTGTTTGAGCTTGGAGAAATTGTTTTTGACCAACAATTTGCTTTCAGGTTCCATTCCAAAAGCTCTTGGAGATGTGAGAGGCTTGGAAACTTTGGACTTATCCTCCAACCTACTCTCAGGATCCATTCCTATTGAACTTCAAAATTTGCATGTCCTAAAGCTTTTAAACCTCTCTTATAATGATTTAGAAGGAGCCATTCCAAGTGGTGGGATTTTCCAAAATCTCTCTGATGTCCACTTAGAAGGCAATAAAAAACTATGCTTGAATTTTGCATGTGTGCCTCAAGTCCATAGAAGAACACATGAGAGATTATATATCATCATAGCTGTTGTGTCAACAATGGTACTATGTCTCACAATTGGCTTTCTACTATATATGAAGTATATAATGGTTAAGGTAATAGCATCAACAGCGTCTGGACAGCTAAAGCATCAGGCTCCAATGATCTCTTATGACGAGCTTCGCTTGGCAACTGAGGAGTTCAGCCAAGAACATTTAATAGGAATTGGGAGTTTTGGATCAGTGTATAAAGGCTATCTAAGTCAGGGAAATACTGTTGCAGTGAAAGTGCTTGACACTCTAAGAACAGGTTCTTTAAAGAGTTTCTTTGCAGAGTGTGAGGCTATGAAGTATTCAAGGCATAGAAATCTGGTTAAGCTCATCACATCATGTTCTAGTGTTGACTTTAAAAACAATAATTTTCTGGCTTTGGTGTATGAGTATTTAAATAATGGGAGCTTGGAAGATTGGATTAAGGGGAGGAGAAAGTATGAAAATGGAAGTGGCTTGAACCTTATGGAGAGAGTGCATATAGCTATAGATGTTGCTTGTGCATTAGATTACCTACACAATGATAGTGAAACTCCTATTGTGCACTGTGATCTAAAACCAAGCAATATTCTCCTAGATGAAGATCTGACTGCAAAGGTTGGAGACTTTGGTTTGGCTAGGTTTCTGATTCAAAATTCAACCGATCAAGTTTCCATCAGCTCCAATCATGTCCTTAGAGGTTCAATTGGTTACATACCTCCAGAGTATGGATGGGGAGAGAAACCTTCAACAGCAGGAGATGTATATAGTTTTGGGATAGTGTTACTAGAGCTCTTCTCTGGAAAAAGTCCACAAGATGATTGCTTCACCGGAGGCCTGAGCATAACAAAATGGGTGCAATCAGGACTCAAAAACAAGAATGTTCAAGTCATTGACCCGCAGCTGCTATCTCTCATTTTTCATGATCATCCTGCTAGAGAAGACTCCAATCTACTAATCCATTGTGTGGATGCAATTATGGGAGTTGGCATATCTTGCACTGTAGACAATCCAGATGACCGCATCGGCGTTAGAGTTGCTGTTTGCCAACTAAAAGCTGCCTGGGACTCTTATGGAAGAGTCTGA 3033 0.3858 MALLSHSHLHIFSLLMILIIHFDYNNLVFVVSSTTLSITTDKEALISLKSQLSINDTSSSHPLSSWSHNSFPCNWTGVLCDKHNQRVTGLDLSGFGLSGNLSPYIGNMSSLRSLQLQDNQITGMIPDQISNLYSLRVLNISSNRLEGVLPSNLTCLNELQILDLSSNKIVSRIPKDISSLKNLQVLKLGRNSFYGTIPQSLGNISSLKNISFGTNSLSGWIPSELGKLHNLIALDLTLNNLTGTVPPVIYNLSSLVSLALAANSFWGEIPYDGHKLPKLLIFNFCFNKFTGRIPGSLHNLTNIRVIRMASNRLEGTVPPGLGNLPFLHMYNIGYNRIVTSGVNGLDFITSLTNSTRLKFLAIDGNMLEGMIPETIGNLSKELSNLYMGGNRFNGSIPSSIGRLSGLKLLNLSYNSISGEVPKELGQLEELEELYLDGNKISGSIPNSLGNLLKLNNIDLSRNELVGKIPISFGNLQNLIYMDLSSNKLNGSIPVEILNLPTLSNVLNLSKNFLSGPIPQVGKLPTIATIDFSNNQLYGNIPSSFSSCLSLEKLFLTNNLLSGSIPKALGDVRGLETLDLSSNLLSGSIPIELQNLHVLKLLNLSYNDLEGAIPSGGIFQNLSDVHLEGNKKLCLNFACVPQVHRRTHERLYIIIAVVSTMVLCLTIGFLLYMKYIMVKVIASTASGQLKHQAPMISYDELRLATEEFSQEHLIGIGSFGSVYKGYLSQGNTVAVKVLDTLRTGSLKSFFAECEAMKYSRHRNLVKLITSCSSVDFKNNNFLALVYEYLNNGSLEDWIKGRRKYENGSGLNLMERVHIAIDVACALDYLHNDSETPIVHCDLKPSNILLDEDLTAKVGDFGLARFLIQNSTDQVSISSNHVLRGSIGYIPPEYGWGEKPSTAGDVYSFGIVLLELFSGKSPQDDCFTGGLSITKWVQSGLKNKNVQVIDPQLLSLIFHDHPAREDSNLLIHCVDAIMGVGISCTVDNPDDRIGVRVAVCQLKAAWDSYGRV 1010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04816 1010 ProSiteProfiles Protein kinase domain profile. 707 1005 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04816 1010 PANTHER OS04G0122200 PROTEIN 226 1000 - -
Trre8g04816 1010 ProSitePatterns Serine/Threonine protein kinases active-site signature. 836 848 IPR008271 GO:0004672|GO:0006468
Trre8g04816 1010 Pfam Leucine rich repeat 549 608 IPR001611 GO:0005515
Trre8g04816 1010 Pfam Leucine rich repeat 110 169 IPR001611 GO:0005515
Trre8g04816 1010 Pfam Leucine rich repeat 381 440 IPR001611 GO:0005515
Trre8g04816 1010 SUPERFAMILY L domain-like 41 337 - -
Trre8g04816 1010 Pfam Protein kinase domain 708 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04816 1010 FunFam LRR receptor-like serine/threonine-protein kinase EFR 678 787 - -
Trre8g04816 1010 Pfam Leucine rich repeat N-terminal domain 40 81 IPR013210 -
Trre8g04816 1010 Gene3D Phosphorylase Kinase; domain 1 686 787 - -
Trre8g04816 1010 Gene3D Transferase(Phosphotransferase) domain 1 788 1007 - -
Trre8g04816 1010 Gene3D Ribonuclease Inhibitor 342 641 IPR032675 -
Trre8g04816 1010 FunFam Inactive leucine-rich repeat receptor-like protein kinase 349 641 - -
Trre8g04816 1010 ProSiteProfiles Leucine-rich repeat profile. 429 452 IPR001611 GO:0005515
Trre8g04816 1010 SUPERFAMILY RNI-like 234 614 - -
Trre8g04816 1010 ProSitePatterns Protein kinases ATP-binding region signature. 713 735 IPR017441 GO:0005524
Trre8g04816 1010 ProSiteProfiles Leucine-rich repeat profile. 158 181 IPR001611 GO:0005515
Trre8g04816 1010 FunFam Receptor protein kinase CLAVATA1 37 198 - -
Trre8g04816 1010 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 788 1010 - -
Trre8g04816 1010 SUPERFAMILY Protein kinase-like (PK-like) 689 997 IPR011009 -
Trre8g04816 1010 Gene3D Ribonuclease Inhibitor 35 100 IPR032675 -
Trre8g04816 1010 Gene3D Ribonuclease Inhibitor 101 341 IPR032675 -
Trre8g04816 1010 FunFam Putative leucine-rich repeat receptor-like protein kinase family protein 238 344 - -
Trre8g04816 1010 SMART serkin_6 707 1003 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04816 1010 SMART LRR_typ_2 595 620 IPR003591 -
Trre8g04816 1010 SMART LRR_typ_2 427 451 IPR003591 -
Trre8g04816 1010 SMART LRR_typ_2 571 594 IPR003591 -
Trre8g04816 1010 SMART LRR_typ_2 156 180 IPR003591 -
Trre8g04816 1010 SMART LRR_typ_2 228 252 IPR003591 -
Trre8g04816 1010 SMART LRR_typ_2 403 426 IPR003591 -
Trre8g04816 1010 SMART LRR_typ_2 300 324 IPR003591 -
Trre8g04816 1010 SMART LRR_typ_2 108 131 IPR003591 -
Trre8g04816 1010 SMART LRR_typ_2 132 155 IPR003591 -
Trre8g04816 1010 SMART LRR_typ_2 475 499 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04816 Trre-Chr8 51490814 51494260 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04816 40 1007 Receptor kinase-like Gene Family AT3G47570 41.129 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Trre8g04816 Pkinase 3.4e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04816 - - gmx:100783512 1546.56