Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04810 ATGAGGAAAAGAGGTCCATGCTTGCACTGTGGAATAACATTTGATCTACATTGGCGTCAGGGACCAAAGGACAAGCCAGTGTTGTGCAATTCATGTGGAATAAGATATAAAAATTGGGGAAACCTTGAAAACTATAGCCCAAGGCATTGTCCACAAATCCACAACAATAATCTTCAAGTTGAGAAAGATGAAGAAGATCCTTCGAGCAACGATCAAGATTCAGAATCAGATAATGATACGAAGGTTCATGATGATAGGCCACAAAATAATGTAGATTTGAGTCAACCACAAAAGACAGTCAAGAGGACAAGGTCCAAAAGGAGGATGACAACTGCAAAGCTTCTTGGGAACTATAAGAAATGA 363 0.3939 MRKRGPCLHCGITFDLHWRQGPKDKPVLCNSCGIRYKNWGNLENYSPRHCPQIHNNNLQVEKDEEDPSSNDQDSESDNDTKVHDDRPQNNVDLSQPQKTVKRTRSKRRMTTAKLLGNYKK 120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04810 120 CDD ZnF_GATA 6 57 IPR000679 GO:0006355|GO:0043565
Trre8g04810 120 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Trre8g04810 120 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 56 - -
Trre8g04810 120 ProSiteProfiles GATA-type zinc finger domain profile. 1 37 IPR000679 GO:0006355|GO:0043565
Trre8g04810 120 PANTHER OSJNBB0038F03.10 PROTEIN 7 86 IPR044589 -
Trre8g04810 120 Pfam GATA zinc finger 7 38 IPR000679 GO:0006355|GO:0043565
Trre8g04810 120 MobiDBLite consensus disorder prediction 52 120 - -
Trre8g04810 120 Gene3D - 1 76 IPR013088 GO:0006355|GO:0008270
Trre8g04810 120 MobiDBLite consensus disorder prediction 74 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04810 Trre-Chr8 51460706 51463021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04810 1 50 C2C2-Gata Transcription Factor Family AT5G47140 56.000 3.48e-16 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre8g04810 GATA 3.6e-09 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04810 - - cam:101493109 105.145