Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04798 ATGAATCCAATTTTGATTCTTCACATGATGTTCTTTCTCATCATAGTCACAGATACAGCAGATACAAGTACAACATCAAACTCAACAACATGTCCTGTGTCTTTGAATTATGTCCAAACAGTCCCTTGGAATTCTTCACTATGTCTTAACTTCAAACCTCTACAATCCAAAACAGAAACACAACAAACTCTTTGTTGTCAAGCTCTTTTATCTCTCTTTGGTATAGCACTTGCTGAATATCTACACAAAAACTCACTTTTCCATTTCCATAACATACCTATCTCAGAAGCTTGTTTACAAAATTACCAATCTAACCTCACTTCACTTTCACTTCCTAACAATCTTGTTTCTTCATGTTTTGATCCATCTCAGTTTGTTTCAACTCCTGATACATGTGTTCATATTCAAACTAAACAAGATTGGCTTAACCAAGTTAATTCCAATGATTTAACTGTTCTTGATAATGTTTGTGAACCAGATTTAACAGATCCTCGTCAATGTCAGGTTTGTCAAAATCAAGGTACTAAGGTTCAACAGATGCTGACTCAGATTGATGGGTTGTGGTATTTTTGGTATATTTGGTGGGTGAAGAAAAGAAAAAATGAAAATTTACTATCAGATAATAGTGGTGGTTCACATGTACCAAGTTTTAGTTTAAGGGTTAGACCGAAAAGTGGGTTGATTTGGTTTGATTTTAAGGATCTTGTGAAGGTTACTGATAATTTTTCGAACGAAAATTTCATTGGAAGGGGCGGGTTTGGTTCGGTTTACAAGGGGGTTTTACCGGATGGGACGGTTGTTGCAGTTAAAAGGATTGAAGAGTCTGATTATGAAGGCGATGTTGAGTTTTACCGAGAGGTTGGGATTGTTAGTAGTTTGAAGCACCGTAATTTGGTGCCGCTAAGAGGCTGTTGTGTGGTTGGTGACGATGTGAATCATGAGTACATTGGAAAGTATCTTGTTTATGATTATATGCCGAATGGTAATCTTAAAGACCATCTTTTTCCGGATACGGAGAACCAAAATGGGAAGAAAACTTTGACTTGGTCTCAAAGAAAAAACATAATCTTGGATGTGGCGAACGCGTTGGTTTATTTGCATTTTGGAGTTAAACCTCCTGTTTATCACAGAGATATCAAAGCTACCAATATACTACTTGACGCAGGCATGAGAGCAAGGGTTGCAGATTTCGGGCTGGCGAAACAGGACTACAGTCAAAATACATCTCAGCTAAATACGAGAGTAGCCGGAACTCGCGGATATCTAGCTCCGGAATACGCACTTTATGGTCAGCTAACTGAGAAAAGTGATGTCTATAGCTTTGGCGTGGTTGTTCTTGAGATCATGTGTGGAAAAAAGGCTCTTCAGTTGTCTTCGTCCGGAGAGCCTAATTTCTTGATCACAGATTGGGTTTGGTCATTAATGAAAAACGGAAACATGGATAAGGCTTTGGATGTCTCTATCTCAAAGGATGGAAATTCCACTAAAAGCATAATGGAGAGATTTTTAGTGGTTGGAATTTTATGCTGTCATGTAGTGGTTGCATTAAGGCCCACAATTTTGGATGCTTTGAAGATGTTAGAAGGAGACATTGAGGTTCCATCAATTCCAGATAGGCCAATGACTCTAGGGAACCGCATGTTCGCCAATGGCGATTCAGCTTAA 1665 0.3856 MNPILILHMMFFLIIVTDTADTSTTSNSTTCPVSLNYVQTVPWNSSLCLNFKPLQSKTETQQTLCCQALLSLFGIALAEYLHKNSLFHFHNIPISEACLQNYQSNLTSLSLPNNLVSSCFDPSQFVSTPDTCVHIQTKQDWLNQVNSNDLTVLDNVCEPDLTDPRQCQVCQNQGTKVQQMLTQIDGLWYFWYIWWVKKRKNENLLSDNSGGSHVPSFSLRVRPKSGLIWFDFKDLVKVTDNFSNENFIGRGGFGSVYKGVLPDGTVVAVKRIEESDYEGDVEFYREVGIVSSLKHRNLVPLRGCCVVGDDVNHEYIGKYLVYDYMPNGNLKDHLFPDTENQNGKKTLTWSQRKNIILDVANALVYLHFGVKPPVYHRDIKATNILLDAGMRARVADFGLAKQDYSQNTSQLNTRVAGTRGYLAPEYALYGQLTEKSDVYSFGVVVLEIMCGKKALQLSSSGEPNFLITDWVWSLMKNGNMDKALDVSISKDGNSTKSIMERFLVVGILCCHVVVALRPTILDALKMLEGDIEVPSIPDRPMTLGNRMFANGDSA 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04798 554 Gene3D Transferase(Phosphotransferase) domain 1 325 534 - -
Trre8g04798 554 SMART serkin_6 242 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04798 554 Pfam SPARK 26 184 IPR043891 -
Trre8g04798 554 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 325 535 - -
Trre8g04798 554 Gene3D Phosphorylase Kinase; domain 1 214 324 - -
Trre8g04798 554 CDD STKc_IRAK 248 529 - -
Trre8g04798 554 ProSiteProfiles Protein kinase domain profile. 242 536 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04798 554 FunFam Receptor-like serine/threonine-protein kinase At4g25390 209 324 - -
Trre8g04798 554 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 98 541 - -
Trre8g04798 554 ProSitePatterns Protein kinases ATP-binding region signature. 248 270 IPR017441 GO:0005524
Trre8g04798 554 SUPERFAMILY Protein kinase-like (PK-like) 218 528 IPR011009 -
Trre8g04798 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 374 386 IPR008271 GO:0004672|GO:0006468
Trre8g04798 554 Pfam Protein kinase domain 243 521 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04798 Trre-Chr8 51334408 51336282 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04798 26 551 Receptor kinase-like Gene Family AT1G11050 51.089 0.0 527
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Trre8g04798 Pkinase 8.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04798 - - gmx:100788367 578.17