Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04794 ATGATTTTTGTTGTAGCTACAAATTCAATCTCAGCAGCATCCTCTTCAGTGTGTCCAGTTGACATGAATTATGTGTTAACAGTTCCTTGGAACACCTCAACCTGTCTTAACTTTGATCAACACTTACAATCACAAAACAAAGCACAAACAAGTCTATGTTGTCAAACTTTGTTGTCACTTTTTGGTATAGCACTATCACAAAACCTCAACAAGAACTCTCTTTTCCAACTTCCAAACCTCTATACATCCACCTCATGCCTTCAAGATTTCCAAACTAAGCTCACTTCCCTTTCACTTCATAATGATCTTGTGTCTTCATGCTTTGAACCACTTCAATTTGTTATCACTCCTAACATATGTGCTAGTATTCAATCTAAACAAGATTGGTACAACAAAGCTGGTTCTGCATCATTGTTCAACACTTCTTGTAAACTAGACCTTAGTGTTTCTACTAATTGTGATGCATGTGTTAATGAAGGACTCAAGGTTCAAGAGAAGCTGAATCAAATTGATGATTATGCAGCTGAACCAATGGAACAAAGGCCTGGCCGAAGAATTAGGCCGAAAACAGGATCAATTTGGTTCAAGTTTGAAGACCTTGTGAAGGCTACTAACAATTTTTCACTCCAAAATTTCATTGGTAGAGGTGGATTTGGGATAGTTTACAAAGGCATTCTATCTGATAACACAACTGTTGCAGTTAAAACCATGGAAGTAACCGATTTTCAAGGAGATGATGAGTTCTACACTGAAGTGGAGATTATTAGCAACTTGAAGCACCGGAATCTAGTTCCGCTAAGAGGGTGTTGCGTGGTCGATGAGGATCATAATCAAGAACACAGAAATAGGTATCTTGTTTATGATTATATGCCGAACGGTAACCTCGAAGATCATCTCTTTCCATCCATGGAAAAGGAGAAAAGATCGTTGACTTGGCCTCAAAGAAAAAACATAATCTTCGATGTGGCGAACGTGTTGGTTTATTTGCACTTTGGAGTAAAACCTGCTATTTATCATAGAGATATCAAAGGTACAAATATACTACTTGATGCAGATATGAGAGCAAGAGTAGCAGATTTTGGACTAGCCAAAGAAAGCAGTGAAAGTAAGTCTCAGATGAATACTAGAGTAGCAGGAACTTATGGATATCTTGCACCAGAATATGCACTTTATGGTCAACTAACTGAGAAAAGTGATGTGTATAGTTTTGGTGTAGTTATTTTGGAGATTATGTGTGGAAGAAAAGCTCTTGAGTTATCTTCATCAGGAACACCTAAATTCTTGATCACAGATTGGGTTTGGTCATTGATGAAATATGGAAACATAGTAGAGGCTTTGGATGGTTCTATCTTGGTGGATGATGAAAAATCTAATAGTAGAAATATAATTATGGAGAGGTTTTTGTTGGTTGGAATTTTGTGTTCTCATGTTATAGCTGATTCAAGGCCAACAATTTTGGATGCTTTGAAGATGTTAGAAGGTGATATTGAGGTTCCATCAATTCCTGATAGGCCAATGAGTCTTGAGCACCAGATCAATATGTTTACTAATGGTAGTTCAGTAGAAATGTGA 1572 0.3715 MIFVVATNSISAASSSVCPVDMNYVLTVPWNTSTCLNFDQHLQSQNKAQTSLCCQTLLSLFGIALSQNLNKNSLFQLPNLYTSTSCLQDFQTKLTSLSLHNDLVSSCFEPLQFVITPNICASIQSKQDWYNKAGSASLFNTSCKLDLSVSTNCDACVNEGLKVQEKLNQIDDYAAEPMEQRPGRRIRPKTGSIWFKFEDLVKATNNFSLQNFIGRGGFGIVYKGILSDNTTVAVKTMEVTDFQGDDEFYTEVEIISNLKHRNLVPLRGCCVVDEDHNQEHRNRYLVYDYMPNGNLEDHLFPSMEKEKRSLTWPQRKNIIFDVANVLVYLHFGVKPAIYHRDIKGTNILLDADMRARVADFGLAKESSESKSQMNTRVAGTYGYLAPEYALYGQLTEKSDVYSFGVVILEIMCGRKALELSSSGTPKFLITDWVWSLMKYGNIVEALDGSILVDDEKSNSRNIIMERFLLVGILCSHVIADSRPTILDALKMLEGDIEVPSIPDRPMSLEHQINMFTNGSSVEM 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04794 523 CDD STKc_IRAK 213 494 - -
Trre8g04794 523 Gene3D Transferase(Phosphotransferase) domain 1 290 499 - -
Trre8g04794 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 337 349 IPR008271 GO:0004672|GO:0006468
Trre8g04794 523 FunFam Receptor-like serine/threonine-protein kinase At4g25390 173 289 - -
Trre8g04794 523 ProSitePatterns Protein kinases ATP-binding region signature. 213 235 IPR017441 GO:0005524
Trre8g04794 523 Gene3D Phosphorylase Kinase; domain 1 175 289 - -
Trre8g04794 523 SUPERFAMILY Protein kinase-like (PK-like) 189 493 IPR011009 -
Trre8g04794 523 SMART serkin_6 207 492 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04794 523 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 290 500 - -
Trre8g04794 523 ProSiteProfiles Protein kinase domain profile. 207 501 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04794 523 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 90 506 - -
Trre8g04794 523 Pfam Protein kinase domain 210 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04794 523 Pfam SPARK 13 172 IPR043891 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04794 Trre-Chr8 51324923 51326770 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04794 176 521 Receptor kinase-like Gene Family AT1G11050 69.143 4.71e-167 485
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Trre8g04794 Pkinase 7.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04794 - - gmx:100806560 506.138