Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04790 ATGGATCAATGTCAAAGTAGTGGTTGTGACATTCCACAAAAGTCTCAAAACAAGGACAATGAATGTCTTAACAAAGAAACAGTTTTCTTACATGGCGACTTAGATTTATTAATCATAGAAGCTAAATCTCTTCCGAATCTTGATTTATCAACCGAAGCAATTAGAAGATGTATAACTATGGGAAACAGTTGCACACCGCCTTTTGTAAAAGGACTCAAAACACACTCGGGTAAAGACAAGATCATAACAAGTGATCCTTATGTATCTGTTTGTCTAGCTGGTGCAACCATAGCACAAACTCGAGTAATTCCAAATTGCGAAAACCCTTTATGGGATGAACATTTTGTTGTTCCTGTTGCTCATCCTGTTCAAAAAGTTGAGTTTCTAGTAAAAGATAATGATATTCTTGGTGCGGAACTCATTGGTGTCGTGGATATACCTGCTCAAAAGTTACTATCTGGTGAGACTATTAATGATTGGTTTCCGATTATAGGTCAATATGGAAATTGTTTAAAGCCTTATCCTGAGTTGCATATTACTATTCAATTTAAGGCGATTGATACCCTTAAAGAGGATTACGAAAGTGTTAATTTAGGTGTTCCTGGTACATATTTTCCGCTTAGGAAAGGAGGGAATGTTACTCTTTATCAAGATGCACATGTACCGGACGGTATGTTACCTGATATTGAACTTGAAGATGGAAAAATGTATCAACATAGTAAATGTTGGGAGGATATTTGTCACGCGATTTTAGAAGCTCATCATTTGATATATATTATCGGATGGTCGGTTTTTCACCCTGTGAAGCTTGTTAGAGAACCGACAAAACCTTTGCCTTCTGGTGGAGAGCTTACACTTGGAGAGCTTTTGAAATACAAGTCACAAGAAGGACTAAGAGTTGTTATGCTTATTTGGGATGATAGAACTTCACATGACAAGTTTCTTTTGAAAACAGATGGTGTGATGCAGACTCATGATGAAGAAACTAAAAAGTTTTTTAAACATTCAACTGTTCATTGTGTGTTATCTCCGCGCTATGCAAGCAATAAACTCAGTATTTTCAAGCAACAGGCATGTAGCTTCTCAGTGGTGGGAACACTCTTTACGCATCACCAGAAATGTGTGCTTCTAGACACTCAAGGTTCTGGGAATAATCGAAAAATAACAGCTTTTATCGGTGGTCTTGATCTGTGTGATGGAAGATATGATACTCCTGAGCATAGACTTTTTCGTGATATTGATTCAGTCTTTCATAATGATTTTCATAATCCTACATTTCAATTAAATTCTAATTCTTTTGCACCAAGACAACCATGGCATGACTTACATTGCAAAATTGAAGGTCCAGCTGCATATGATATATTAACCAATTTTGAACAAAGATCACGGAAGGCAAAAAAATGGCGCGATTTCAGGCTTAGAAAGGTGACAAATTGGCATGATGATGCTTTACTAAGGCTAGATCGTATTTCATGGATTGTAAAACCATCTTCTGGTCCAGAAGGCGATAAATCTGTTCGTGTAACCGAAGACGCTGATCCTGAGAGTTGGCATGTACAGATATTTCGGTCCATAGATTCAGGATCTGTGAAGGGATTTCCAAAGGATTTTGATAAGGCAAAAGCTCAGAATCTTTTATGTGGAAAAAATTTAAAAGTTGATCAAAGCATCCATGCTGCTTATGTAAAAGCAATAAGATCCGCGGAGCGCTTCATTTATATTGAGAATCAGTATTTTCTTGGCTCCTCGTACCATTGGCCTTCATATAAGAATGCAGGTGCAAATCACTTGGTTCCGATGGAGTTGGCTTTAAAAATTGCGAACAAGATAAGCAAGAATGAACGCTTTTGTGTGTATATAGTTATACCAATGTGGCCGGAAGGAGTTCCAACTAGTGCTGCTGTTCAAGAAATCTTGTTCTGGCAAGGACAAACAATGTCTATGATGTACAAGATTATTGCAGATGCACTTGAAAAAGCAGGTCTCTCTGAATGTTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGAAAAAGAGAACCTCAATCGCACCAAAGTCAATCACCAATAAATCAATCATCTGAAAACCGCGCCTTGGTAGCAGTTAAAAAATACCGGCGTTTTATGATTTATGTTCATGCGAAAGGAATGATAGTTGATGATGGATATGTAATCATCGGATCAGCAAATATTAATCAGAGATCATTAGATGGATCAAGAGACACAGAAATAGCCATGGGGGCTTATCAACCAAAACATACATTGGCACAAAAGAACACTCTTCCACGCGGCCAGGTGTACGGATACCGAATGTCACTTTGGGCCGAGCACCTTGGTGGTATTGATGACACGATTACTAAACCTCACACGTTGGAATGTGTTAGACATGTTAATAGAATGGCTAGGAAAAATTGGAGCATATACGTATCTGAGGAAGGACAACAAATGATGGGAACCTTGATGCAATATCCGGTTCATGTTAGCAGAAATGGAAAAGTTAGTTCATTACAAGGTCATGAGTCTTTTCCTGATGTTGGTGGCAAAATTCTTGGAGCACATAACTCACTTCCAGATGCACTAACCACATGA 2592 0.3808 MDQCQSSGCDIPQKSQNKDNECLNKETVFLHGDLDLLIIEAKSLPNLDLSTEAIRRCITMGNSCTPPFVKGLKTHSGKDKIITSDPYVSVCLAGATIAQTRVIPNCENPLWDEHFVVPVAHPVQKVEFLVKDNDILGAELIGVVDIPAQKLLSGETINDWFPIIGQYGNCLKPYPELHITIQFKAIDTLKEDYESVNLGVPGTYFPLRKGGNVTLYQDAHVPDGMLPDIELEDGKMYQHSKCWEDICHAILEAHHLIYIIGWSVFHPVKLVREPTKPLPSGGELTLGELLKYKSQEGLRVVMLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQACSFSVVGTLFTHHQKCVLLDTQGSGNNRKITAFIGGLDLCDGRYDTPEHRLFRDIDSVFHNDFHNPTFQLNSNSFAPRQPWHDLHCKIEGPAAYDILTNFEQRSRKAKKWRDFRLRKVTNWHDDALLRLDRISWIVKPSSGPEGDKSVRVTEDADPESWHVQIFRSIDSGSVKGFPKDFDKAKAQNLLCGKNLKVDQSIHAAYVKAIRSAERFIYIENQYFLGSSYHWPSYKNAGANHLVPMELALKIANKISKNERFCVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIIADALEKAGLSECYHPQDYLNFYCLGKREPQSHQSQSPINQSSENRALVAVKKYRRFMIYVHAKGMIVDDGYVIIGSANINQRSLDGSRDTEIAMGAYQPKHTLAQKNTLPRGQVYGYRMSLWAEHLGGIDDTITKPHTLECVRHVNRMARKNWSIYVSEEGQQMMGTLMQYPVHVSRNGKVSSLQGHESFPDVGGKILGAHNSLPDALTT 863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04790 863 PANTHER PHOSPHOLIPASE D 25 852 IPR015679 -
Trre8g04790 863 Gene3D Endonuclease Chain A 230 483 - -
Trre8g04790 863 Pfam PLD-like domain 627 745 IPR025202 -
Trre8g04790 863 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 30 184 IPR035892 -
Trre8g04790 863 CDD C2_plant_PLD 27 183 - -
Trre8g04790 863 SUPERFAMILY Phospholipase D/nuclease 555 792 - -
Trre8g04790 863 FunFam Phospholipase D delta 233 483 - -
Trre8g04790 863 Pfam Phospholipase D C terminal 783 853 IPR024632 -
Trre8g04790 863 Gene3D Endonuclease Chain A 525 762 - -
Trre8g04790 863 Pfam Phospholipase D Active site motif 367 401 IPR001736 GO:0003824
Trre8g04790 863 Gene3D C2 domain 28 185 IPR035892 -
Trre8g04790 863 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 366 401 IPR001736 GO:0003824
Trre8g04790 863 ProSiteProfiles C2 domain profile. 15 161 IPR000008 -
Trre8g04790 863 SUPERFAMILY Phospholipase D/nuclease 203 470 - -
Trre8g04790 863 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 709 736 IPR001736 GO:0003824
Trre8g04790 863 SMART pld_4 709 736 IPR001736 GO:0003824
Trre8g04790 863 SMART pld_4 366 401 IPR001736 GO:0003824
Trre8g04790 863 Pfam C2 domain 32 163 IPR000008 -
Trre8g04790 863 PIRSF PLD_plant 19 863 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Trre8g04790 863 SMART C2_3c 33 160 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04790 Trre-Chr8 51300017 51303528 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04790 26 862 Phospholipase D Gene Family (Wang group) AT2G42010 53.793 0.0 917
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04790 K01115 - gmx:100810824 1479.92