Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04789 ATGGATCAATGTCAAAGTAGTGGTTGTGACATTCCACAAAAGTCTCAAAACAAGGACAATGAATGTCTTAACAAAGAAACAGTTTTCTTACATGGCGACTTAGATTTATTAATCATAGAAGCTAAATCTCTTCCGAATCTTGATTTATCAACCGAAGCAATTAGAAGATGTATAACTATGGGAAACAGTTGCACACCGCCTTTTGTAAAAGGACTCAAAACACACTCGGGTAAAGACAAGATCATAACAAGTGATCCTTATGTATCTGTTTGTCTAGCTGGTGCAACCATAGCACAAACTCGAGTAATTCCAAATTGCGAAAACCCTTTATGGGATGAACATTTTGTTGTTCCTGTTGCTCATCCTGTTCAAAAAGTTGAGTTTCTAGTAAAAGATAATGATATTCTTGGTGCGGAACTCATTGGTGTCGTGGATATACCTGCTCAAAAGTTACTATCTGGTGAGACTATTAATGATTGGTTTCCGATTATAGGTCAATATGGAAATTGTTTAAAGCCTTATCCTGAGTTGCATATTACTATTCAATTTAAGGCGATTGATACCCTTAAAGAGGATTACGAAAGTGTTAATTTAGGTGTTCCTGGTACATATTTTCCGCTTAGGAAAGGAGGGAATGTTACTCTTTATCAAGATGCACATGTACCGGACGGTATGTTACCTGATATTGAACTTGAAGATGGAAAAATGTATCAACATAGTAAATGTTGGGAGGATATTTGTCACGCGATTTTAGAAGCTCATCATTTGATATATATTATCGGATGGTCGGTTTTTCACCCTGTGAAGCTTGTTAGAGAACCGACAAAACCTTTGCCTTCTGGTGGAGAGCTTACACTTGGAGAGCTTTTGAAATACAAGTCACAAGAAGGACTAAGAGTTGTTATGCTTATTTGGGATGATAGAACTTCACATGACAAGTTTCTTTTGAAAACAGATGGTGTGATGCAGACTCATGATGAAGAAACTAAAAAGTTTTTTAAACATTCAACTGTTCATTGTGTGTTATCTCCGCGCTATGCAAGCAATAAACTCAGTATTTTCAAGCAACAGGTGGTGGGAACACTCTTTACGCATCACCAGAAATGTGTGCTTCTAGACACTCAAGGTTCTGGGAATAATCGAAAAATAACAGCTTTTATCGGTGGTCTTGATCTGTGTGATGGAAGATATGATACTCCTGAGCATAGACTTTTTCGTGATATTGATTCAGTCTTTCATAATGATTTTCATAATCCTACATTTCAATTAAATTCTAATTCTTTTGCACCAAGACAACCATGGCATGACTTACATTGCAAAATTGAAGGTCCAGCTGCATATGATATATTAACCAATTTTGAACAAAGATCACGGAAGGCAAAAAAATGGCGCGATTTCAGGCTTAGAAAGGTGACAAATTGGCATGATGATGCTTTACTAAGGCTAGATCGTATTTCATGGATTGTAAAACCATCTTCTGGTCCAGAAGGCGATAAATCTGTTCGTGTAACCGAAGACGCTGATCCTGAGAGTTGGCATGTACAGATATTTCGGTCCATAGATTCAGGATCTGTGAAGGGATTTCCAAAGGATTTTGATAAGGCAAAAGCTCAGAATCTTTTATGTGGAAAAAATTTAAAAGTTGATCAAAGCATCCATGCTGCTTATGTAAAAGCAATAAGATCCGCGGAGCGCTTCATTTATATTGAGAATCAGTATTTTCTTGGCTCCTCGTACCATTGGCCTTCATATAAGAATGCAGGTGCAAATCACTTGGTTCCGATGGAGTTGGCTTTAAAAATTGCGAACAAGATAAGCAAGAATGAACGCTTTTGTGTGTATATAGTTATACCAATGTGGCCGGAAGGAGTTCCAACTAGTGCTGCTGTTCAAGAAATCTTGTTCTGGCAAGGACAAACAATGTCTATGATGTACAAGATTATTGCAGATGCACTTGAAAAAGCAGGTCTCTCTGAATGTTATCATCCACAAGATTATCTCAATTTTTACTGCCTTGGAAAAAGAGAACCTCAATCGCACCAAAGTCAATCACCAATAAATCAATCATCTGAAAACCGCGCCTTGGTAGCAGTTAAAAAATACCGGCGTTTTATGATTTATGTTCATGCGAAAGGAATGATAGTTGATGATGGATATGTAATCATCGGATCAGCAAATATTAATCAGAGATCATTAGATGGATCAAGAGACACAGAAATAGCCATGGGGGCTTATCAACCAAAACATACATTGGCACAAAAGAACACTCTTCCACGCGGCCAGGTGTACGGATACCGAATGTCACTTTGGGCCGAGCACCTTGGTGGTATTGATGACACGATTACTAAACCTCACACGTTGGAATGTGTTAGACATGTTAATAGAATGGCTAGGAAAAATTGGAGCATATACGTATCTGAGGAAGGACAACAAATGATGGGAACCTTGATGCAATATCCGGTTCATGTTAGCAGAAATGGAAAAGTTAGTTCATTACAAGGTCATGAGTCTTTTCCTGATGTTGGTGGCAAAATTCTTGGAGCACATAACTCACTTCCAGATGCACTAACCACATGA 2577 0.3803 MDQCQSSGCDIPQKSQNKDNECLNKETVFLHGDLDLLIIEAKSLPNLDLSTEAIRRCITMGNSCTPPFVKGLKTHSGKDKIITSDPYVSVCLAGATIAQTRVIPNCENPLWDEHFVVPVAHPVQKVEFLVKDNDILGAELIGVVDIPAQKLLSGETINDWFPIIGQYGNCLKPYPELHITIQFKAIDTLKEDYESVNLGVPGTYFPLRKGGNVTLYQDAHVPDGMLPDIELEDGKMYQHSKCWEDICHAILEAHHLIYIIGWSVFHPVKLVREPTKPLPSGGELTLGELLKYKSQEGLRVVMLIWDDRTSHDKFLLKTDGVMQTHDEETKKFFKHSTVHCVLSPRYASNKLSIFKQQVVGTLFTHHQKCVLLDTQGSGNNRKITAFIGGLDLCDGRYDTPEHRLFRDIDSVFHNDFHNPTFQLNSNSFAPRQPWHDLHCKIEGPAAYDILTNFEQRSRKAKKWRDFRLRKVTNWHDDALLRLDRISWIVKPSSGPEGDKSVRVTEDADPESWHVQIFRSIDSGSVKGFPKDFDKAKAQNLLCGKNLKVDQSIHAAYVKAIRSAERFIYIENQYFLGSSYHWPSYKNAGANHLVPMELALKIANKISKNERFCVYIVIPMWPEGVPTSAAVQEILFWQGQTMSMMYKIIADALEKAGLSECYHPQDYLNFYCLGKREPQSHQSQSPINQSSENRALVAVKKYRRFMIYVHAKGMIVDDGYVIIGSANINQRSLDGSRDTEIAMGAYQPKHTLAQKNTLPRGQVYGYRMSLWAEHLGGIDDTITKPHTLECVRHVNRMARKNWSIYVSEEGQQMMGTLMQYPVHVSRNGKVSSLQGHESFPDVGGKILGAHNSLPDALTT 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04789 858 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 361 396 IPR001736 GO:0003824
Trre8g04789 858 PIRSF PLD_plant 19 858 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Trre8g04789 858 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 704 731 IPR001736 GO:0003824
Trre8g04789 858 SMART pld_4 361 396 IPR001736 GO:0003824
Trre8g04789 858 SMART pld_4 704 731 IPR001736 GO:0003824
Trre8g04789 858 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 30 184 IPR035892 -
Trre8g04789 858 CDD C2_plant_PLD 27 183 - -
Trre8g04789 858 PANTHER PHOSPHOLIPASE D 25 847 IPR015679 -
Trre8g04789 858 Pfam Phospholipase D Active site motif 362 396 IPR001736 GO:0003824
Trre8g04789 858 Pfam PLD-like domain 622 740 IPR025202 -
Trre8g04789 858 SUPERFAMILY Phospholipase D/nuclease 203 465 - -
Trre8g04789 858 Pfam Phospholipase D C terminal 778 848 IPR024632 -
Trre8g04789 858 FunFam Phospholipase D delta 233 478 - -
Trre8g04789 858 Gene3D C2 domain 28 185 IPR035892 -
Trre8g04789 858 Gene3D Endonuclease Chain A 230 478 - -
Trre8g04789 858 Gene3D Endonuclease Chain A 520 757 - -
Trre8g04789 858 ProSiteProfiles C2 domain profile. 15 161 IPR000008 -
Trre8g04789 858 SUPERFAMILY Phospholipase D/nuclease 550 787 - -
Trre8g04789 858 SMART C2_3c 33 160 IPR000008 -
Trre8g04789 858 Pfam C2 domain 32 163 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04789 Trre-Chr8 51300017 51303528 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04789 26 857 Phospholipase D Gene Family (Wang group) AT2G42010 54.104 0.0 922
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04789 K01115 - gmx:100810824 1486.09