Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04779 ATGGGTGATTTGATTGAACCAGATGGATTTTCAATATGGGGTCCTAATGAAACACACACTGCAACCTGCTACTTTGCAGAATTTGGTAGCACTGGACCAGGTGCCAATTCTCAAGCAAGGGCTAAATGGAGTAAAGGTCTTATTAGTAAGGATGAAGCTACTAAATTCACTGCTCAATCATGGCTTCAAGCTAACACTTGGTTGCCTGCCACTGGCATTCCTTTCAGTCCTGGCCTTGAAGCTTAA 246 0.435 MGDLIEPDGFSIWGPNETHTATCYFAEFGSTGPGANSQARAKWSKGLISKDEATKFTAQSWLQANTWLPATGIPFSPGLEA 81
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04779 81 SUPERFAMILY Pectin lyase-like 1 78 IPR011050 -
Trre8g04779 81 Gene3D - 1 79 IPR012334 -
Trre8g04779 81 Pfam Pectinesterase 1 64 IPR000070 GO:0030599|GO:0042545
Trre8g04779 81 PANTHER PECTINESTERASE 1 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04779 Trre-Chr8 51222905 51223150 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04779 1 79 Carbohydrate Esterase AT1G11590 40.741 3.59e-15 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04779 K01051 - gmx:100808559 114.775