LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g04778	ATGGAAAACATTGCCGCGCAATTAAAGCGCGGCATCTCGCGCCAATTCTCCTCCGGCTCGTTACGTAAAACTCTCAGCCGTCAATTCACACGTCAAGCTTCTCTCGATCCACGCCGTAACAATCTCCGATTCAGTTTCGGTCGTCAATCATCTCTCGATCCGATCCGTCGTAGTCCTGGTCAAGGTGAAGCCGAACTCACCGTGCCGGAGAATCTCGATTCCACCATGCAACTTCTCTTTATGGCTTGTCGTGGTGATGTTAAAGGTGTTGAAGATTTGCTTAACGAAGGTATCGATGTTAATAGCATTGATCTCGATGGTCGTACTGCTCTCCATATCGCCGCCTGTGAAGGTCATGTTGAGGTTGCTAAACTCTTGCTCAGCCGTAAGGCTAACCTTGATGCTCGTGATCGTTGGGGCAGTACGGCAGCGGCTGATGCTAAATATTATGGAAATTCAGAAGTTTATTATATGTTGAAAGCGCGTGGAGCAAAAGTGCCGAAAACCAGGAGGACTCCAATGACTGTTGCAAATCCTCGTGAAGTTCCTGAATATGAACTCAATCCGTTAGAGCTACAGGTTCGGAAGAGTGATGGTATTTCAACGGGGACATATCAAGTAGCTAAATGGAATGGCACAAAGGTTGCAGTGAAAATACTTGATAAGGACAGTTATTCAAATCCTGATGCCATAAATGTTTTCAAACATGAGCTCACATTATTGGAAAAGGTGCGACATCCTAATGTGGTCCAGTTTGTTGGAGCTGTCACCCAAAACATACCTATGATGATTGTTCGAGAGTACCATGCTAAGGGTGACTTAACAGCTTATATTCAAAAGAAAGGGCGTTTGTCCCCATCAAAAGTTCTACGGTTTGCTCTTGATATTGCTAGGGGCATGAATTATCTTCACGAATGCAAACCAGATCCTGTTATCCACTGTGATTTAAAGCCAAAAAATATTTTGCTGGATAGTGGAGGGCAATTGAAGGTAGCTGGATTTGGCACTGTGAGATTTTCACTACTCTCACCTGAGAAAGCATTGTTAGACCAGCCTGAGGACAACGTGGACCGTTCAAGTTTATACGTGGCACCAGAGATTTACAAAGGTGATCTATTTGATAGAAGTGTGGATGCATATTCTTTTGGTCTCATTGTATATGAGATGATAGAGGGTATACCGCCCTTCCATCCCAAGCCTGCAGAGGAAGCTTTGAAACTGTTGTGTTTAGAAGGGAAGAGACCTACATTCAAGATCAAAACAAAAAGTTATCCTCCGGATTTGAAAGAGTTGATTGAGGGATGTTGGGATCTAGATCCTGCTGTCAGACCACCATTTTCTCAGGTCATTGCCCGGTTGGACAAAATTGTTGCAAATTGCTCAAAACAAGGATGGTGGAAAGATACTTTTAAACTTCCATGGTATGTTTCCTAG	1434	0.4379	MENIAAQLKRGISRQFSSGSLRKTLSRQFTRQASLDPRRNNLRFSFGRQSSLDPIRRSPGQGEAELTVPENLDSTMQLLFMACRGDVKGVEDLLNEGIDVNSIDLDGRTALHIAACEGHVEVAKLLLSRKANLDARDRWGSTAAADAKYYGNSEVYYMLKARGAKVPKTRRTPMTVANPREVPEYELNPLELQVRKSDGISTGTYQVAKWNGTKVAVKILDKDSYSNPDAINVFKHELTLLEKVRHPNVVQFVGAVTQNIPMMIVREYHAKGDLTAYIQKKGRLSPSKVLRFALDIARGMNYLHECKPDPVIHCDLKPKNILLDSGGQLKVAGFGTVRFSLLSPEKALLDQPEDNVDRSSLYVAPEIYKGDLFDRSVDAYSFGLIVYEMIEGIPPFHPKPAEEALKLLCLEGKRPTFKIKTKSYPPDLKELIEGCWDLDPAVRPPFSQVIARLDKIVANCSKQGWWKDTFKLPWYVS	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g04778	477	SUPERFAMILY	Protein kinase-like (PK-like)	205	453	IPR011009	-
	Trre8g04778	477	Pfam	Protein tyrosine and serine/threonine kinase	202	453	IPR001245	GO:0004672\|GO:0006468
	Trre8g04778	477	Gene3D	-	48	185	IPR036770	-
	Trre8g04778	477	SMART	serkin_6	194	457	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre8g04778	477	SUPERFAMILY	Ankyrin repeat	75	176	IPR036770	-
	Trre8g04778	477	Pfam	Ankyrin repeats (3 copies)	80	166	IPR002110	GO:0005515
	Trre8g04778	477	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	311	323	IPR008271	GO:0004672\|GO:0006468
	Trre8g04778	477	Gene3D	Phosphorylase Kinase; domain 1	186	269	-	-
	Trre8g04778	477	PIRSF	ILK	8	474	-	-
	Trre8g04778	477	ProSiteProfiles	Ankyrin repeat profile.	106	138	IPR002110	GO:0005515
	Trre8g04778	477	FunFam	serine/threonine-protein kinase STY46-like	187	270	-	-
	Trre8g04778	477	Gene3D	Transferase(Phosphotransferase) domain 1	271	471	-	-
	Trre8g04778	477	PANTHER	SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED	142	456	-	-
	Trre8g04778	477	ProSiteProfiles	Ankyrin repeat region circular profile.	106	138	-	-
	Trre8g04778	477	ProSiteProfiles	Protein kinase domain profile.	190	457	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre8g04778	477	FunFam	Integrin-linked protein kinase 1	47	185	-	-
	Trre8g04778	477	SMART	ANK_2a	106	135	IPR002110	GO:0005515
	Trre8g04778	477	SMART	ANK_2a	74	102	IPR002110	GO:0005515
	Trre8g04778	477	FunFam	Integrin-linked protein kinase family	270	469	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g04778	Trre-Chr8	51213898	51219384	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g04778	1	474	MAP Kinase Kinase Kinase	AT2G43850	75.941	0.0	787

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TKL-Pl-5	Trre8g04778		PK_Tyr_Ser-Thr	5.6e-46	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g04778	-		-	gmx:100810411	869.766