Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04769 ATGGGTAATTGTTGGTATAGGGAATCATCAGATTATAGAGTCTCATCCAATGCAAAATCAGAACAAAACCAGGTGGCAATGAAAGAAAGGCATGATGATAGTAAGTTACCATCAAATCCAGAAGAAGTTGAAGATCTTAGGCGTGTTGACTCATCTGCAAATCCATTGATAGCATTCACTTACATTGAGCTTAAAGTAATAACTTCAAATTTTAGACCAGATCATGTGTTAGGTGGAGGTGGATTTGGAAGTGTTTATAAAGGCTTTATTTCTCAAGAGTTAAGGGAAGGTCTTCCTTCACTTCCTGTTGCTGTTAAGGTTCATGATGGTGACAATAGCCATCAAGGCCATAGAGAATGGCTGGCAGAAGTGATATTTTTGGGGCAACTTTCACATCCAAATTTGGTGAAATTAATTGGATACTGCTGTGAAAATGAACATAGGGTGTTAATATATGAGTATATGGCACGGGGGAGTGTGGAACACAATTTGTTCTCAAAAATTTTGCTTCCCCTGCCATGGTCAATAAGAATGAAGATCGCATATGGAGCCGCAAAAGGACTCGCATTTCTTCACGAAGCAAAGAAACCCGTCATCTATCGTGATTTTAAGACATCAAATATTTTATTGGACCTGGACTATAATGCAAAGCTTTCTGACTTTGGCCTTGCTAAAGATGGACCAGTTGGAGACAAGTCCCATGTTTCTACTAGAATAATGGGAACATATGGATATGCTGCACCAGAATACATTATGACAGGTCATTTGACTCCTAGAAGTGATGTTTATAGTTTTGGTGTTGTTCTTCTTGAACTAATGACTGGAAGAAAATCTTTAGACAAATTAAGACCAGCTAGAGAGCAAAACCTAACAGATTGGGCTCTTCCTATACTAAAGGAAAAGAAAAAAGTGCTAAATATTATTGATCCAAGGCTAGAAGGTGATTATCCAACAAAAGGAGCTCACAAAGCTGCAATGCTTGCATATCATTGCTTAAACAAGAATCCAAAAGCAAGGCCTCTAATGAGAGATATCGTTGATTCATTGGAACCTTTGACAACATATAGTGAGATCCCTATTGGAAAAACATTTACCATAATCACTGAGGTTGCTGAAAATAATGTTAAAAAGAAAGATGCAGAATGA 1146 0.3752 MGNCWYRESSDYRVSSNAKSEQNQVAMKERHDDSKLPSNPEEVEDLRRVDSSANPLIAFTYIELKVITSNFRPDHVLGGGGFGSVYKGFISQELREGLPSLPVAVKVHDGDNSHQGHREWLAEVIFLGQLSHPNLVKLIGYCCENEHRVLIYEYMARGSVEHNLFSKILLPLPWSIRMKIAYGAAKGLAFLHEAKKPVIYRDFKTSNILLDLDYNAKLSDFGLAKDGPVGDKSHVSTRIMGTYGYAAPEYIMTGHLTPRSDVYSFGVVLLELMTGRKSLDKLRPAREQNLTDWALPILKEKKKVLNIIDPRLEGDYPTKGAHKAAMLAYHCLNKNPKARPLMRDIVDSLEPLTTYSEIPIGKTFTIITEVAENNVKKKDAE 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04769 381 ProSitePatterns Protein kinases ATP-binding region signature. 77 106 IPR017441 GO:0005524
Trre8g04769 381 CDD STKc_IRAK 77 352 - -
Trre8g04769 381 SUPERFAMILY Protein kinase-like (PK-like) 48 349 IPR011009 -
Trre8g04769 381 Pfam Protein tyrosine and serine/threonine kinase 75 349 IPR001245 GO:0004672|GO:0006468
Trre8g04769 381 MobiDBLite consensus disorder prediction 15 47 - -
Trre8g04769 381 Gene3D Phosphorylase Kinase; domain 1 31 154 - -
Trre8g04769 381 Gene3D Transferase(Phosphotransferase) domain 1 155 363 - -
Trre8g04769 381 FunFam Serine/threonine-protein kinase BIK1 37 154 - -
Trre8g04769 381 FunFam Probable serine/threonine-protein kinase PBL8 155 368 - -
Trre8g04769 381 PANTHER OS01G0588500 PROTEIN-RELATED 29 352 - -
Trre8g04769 381 MobiDBLite consensus disorder prediction 24 47 - -
Trre8g04769 381 ProSiteProfiles Protein kinase domain profile. 71 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04769 381 ProSitePatterns Serine/Threonine protein kinases active-site signature. 198 210 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04769 Trre-Chr8 51068126 51073719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04769 30 354 Glycoside Hydrolase AT3G07070 49.102 1.87e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre8g04769 PK_Tyr_Ser-Thr 2.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04769 - - psat:127105028 688.723