Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04741 ATGCAGATCTTCGTGAAAACCCTAACAGGGAAGACGATAACCCTCGAGGTTGAGTCTTCTGACACAATCGACAACGTCAAAGCCAAGATCCAAGACAAGGAAGGAATTCCACCAGACCAGCAACGTCTCATCTTCGCCGGAAAGCAGTTGGAAGACGGCCGCACTCTCGCTGACTACAACATCCAGAAAGAATCAACTCTTCACCTTGTTCTCCGTCTTCGTGGTGGTGCTAAGAAGCGTAAGAAGAAGACCTACACAAAGCCAAAGAAGATTAAGCATAAGCATAAGAAGGTGAAACTTGCTGTTCTTCAGTTTTATAAGGTTGATGATTCTGGAAAAGTTCAGAGGTTGAGGAAGGAGTGTCCTAATGCTGAATGTGGTGCTGGAACTTTCATGGCGAATCATTTTGATCGTCATTATTGTGAATAG 429 0.4452 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGAKKRKKKTYTKPKKIKHKHKKVKLAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCE 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04741 142 PANTHER UBIQUITIN 1 89 - -
Trre8g04741 142 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515
Trre8g04741 142 SMART ubq_7 1 72 IPR000626 GO:0005515
Trre8g04741 142 Gene3D - 81 142 IPR038582 -
Trre8g04741 142 SUPERFAMILY Ubiquitin-like 1 93 IPR029071 -
Trre8g04741 142 SUPERFAMILY Zn-binding ribosomal proteins 100 141 IPR011332 GO:0006412
Trre8g04741 142 Gene3D - 1 80 - -
Trre8g04741 142 SMART Ribosomal_S27_2 102 141 IPR002906 GO:0003735|GO:0005840|GO:0006412
Trre8g04741 142 CDD Ubl_ubiquitin 1 76 - -
Trre8g04741 142 FunFam Ubiquitin-40S ribosomal protein S27a 1 79 - -
Trre8g04741 142 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515
Trre8g04741 142 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Trre8g04741 142 Pfam Ribosomal protein S27a 102 141 IPR002906 GO:0003735|GO:0005840|GO:0006412
Trre8g04741 142 PRINTS Ubiquitin signature 32 52 IPR019956 -
Trre8g04741 142 PRINTS Ubiquitin signature 53 74 IPR019956 -
Trre8g04741 142 PRINTS Ubiquitin signature 11 31 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04741 Trre-Chr8 50911238 50912820 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04741 1 141 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 97.163 2.08e-100 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04741 K02977 - sspl:121748943 252.292