Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04730 ATGCCTCGTAAAGTTAACTATGGAATTGATTACTATGACGATGACGACTACGAGGATTATGATGACTATGATTATGATGTTGAATCTGAAAAATATGGAGCAGGAGAAGGACCTGATACAAAGCAAGAGACCATCAAGCCTGGAGTTTGGAAATGCTCCATTTGTACTTATGACAACGATGAGAGTATGACTTCGTGTGATATTTGTGGCGTTATACGTCATCCCGTGGTTAACAATGGAACTTCCAACAGTAACAAAACAGTTGGAGATATAAACAAAACTCCTGGAGCATCCAAGTTGGCCAGGTCTCTTTTTCAATCATTACCACAACAGATTCCCAAAGAGGTTGTATTATTTCCGATGCGGGATGTTGGTTTTTTGACAGATGGCAGTAACATCTACAAGTTTGAGAATGTCCAAGGCGAATTTCATGAAATTCATAAGGATTTTAATACTCAAAGCCATCCCTCTTTAAGTATAGATCCTTTCAAATTTGACGTTCCATCGCCAGATGATGTGGTTTTTACTGGCCTACATTCTTCAAAAAAGGGTTTGAAAGACAAAGTTAAAAACTCTAAAGATTCTCAGCTTTCATCAAGCAGCAGAGAGAAGAAAGAACTTGCTGTAGAATCCAATGCTGAAAGTCTAGATAACCTATCATCCTTAATGCAAAAGAACAAGCAGGATAGTGCAGCCAAGAACAAGCTTTCCAAAAATGTAGAAATTAATCTTGAAACAATTGGCGAAACCTTAAACAGCTTATCATCATCTTTGCCAAAGAACAAAGGAGATAATGCAAATAGAATAAATTCTTCAAAAAATGGTACAAATGGTACCCGATCAAACAAAGAAAAGTCTGGTAGTTTGTCTGCACTCCCAAAAGTCGAAAAAAGTGATAAGCTTAGTTTGTCTTCTAACAAAGACGGAAAGTCTGAAAGTGCTTCCAGCAGTTCTACCCACATGGTTCTTGATGAAAGATCTGGAAAATCTGATAATACTAATGCTAAGGGACCTCATAAACAAGTTACTTACCAGCCAGAAAAGTGGATGCTCCCTCAACAGTCTGAAGATACGCTGACTCAGTTGAATCTTGCAATTGTTGGTCATGTTGATTCTGGAAAATCAACACTATCCGGTAGGTTATTACACCTATTGGGACGGATTTCCAAGAAAGATATGCACAAAAATGAAAAGGAGGCCAAGTTACAGGGCAAAGGATCCTTTGCTTATGCTTGGGCACTTGATGAAAGTTCTGAAGAAAGGGAAAGGGGAATAACCATGACAGTAGCTGTGGCATATTTTGACACTAAGAAATATCACGTAGTTGTGCTTGACTCTCCTGGTCATAAAGATTTTATCCCAAACATGATTTCTGGAGCTACACAAGCCGATGCTGCAATTCTTGTTATAGATGCCTCACTTGGTGCATTTGAAGCTGGTATGGATGGTGGCAAAGGACAAACAAGGGAGCATGCACAACTTATAAGAAGTTTTGGTGTAGACCATGTTATAGTTGCAGTAAATAAGATGGATGCTGTAGCATTCTCAAAAGACCGTTTTGATTTTATAAGACATCAGCTGGGAACTTTTCTCCGCTCATGTGGTTTCAAAGATTCTTCTCTCTCATGGATTCCCTTGAGTGCCATGGAAAATCAAAATTTGGTGGCATCCCCTTCTGACGCTCATTTCAAAAACTGGTATACTGGACCTTATCTGTTAGATGCAATTGACTCACTACAACCTCCTACTAGAGAATTCGCAAAGCCTCTGTTAATGCCAATATGTGATATCATCAAATCAACTGCGCAAGGACAGGTGTCTGCTTGTGGTAAACTAGAAGCAGGAGCTCTTCGAAGTGGAACAAAGGTATTAGTTATGCCTTCAGATGTTGTTGGAACAGTACGCACATTGGAGCGTGACTCTAATGCCTGCTCTGTTGCAAGAGCTGGAGATAACGTTGCCGTAACGTTGCAAGGTGTTGATGGAAGTCATGTATTTTCTGGAGGTGTATTATGTCATCCTGACTTTCCTGTTGCAATTGCAAAGCATTTGGAGTTGAAATTGCTTGTCTTAGATGGTGCAAGTCCCATATTGGTCGGCGCTCAGTTAGAGTTTCATATACATCATGCAAAGGAACCTGCTAGAGTTTCAAAAATATTGTCAGTACTTGATCCCAAGACTGGTAAGGTGACCAAAAAGTCCCCTCGCTGTCTCACATCAAAACAAAGTGCAGTAATTGAGGTGATTTTGCATGAGCCAGTCTGCGTGGTAGAGTTTTCTAGATGTAAAGCTCTTGGAAGAGTATCCCTTAGATCATTAGGAAGAACAATTGCAGTTGGACTTGTGACAAGAATAATCGAAGAACAAGGTTAA 2373 0.3978 MPRKVNYGIDYYDDDDYEDYDDYDYDVESEKYGAGEGPDTKQETIKPGVWKCSICTYDNDESMTSCDICGVIRHPVVNNGTSNSNKTVGDINKTPGASKLARSLFQSLPQQIPKEVVLFPMRDVGFLTDGSNIYKFENVQGEFHEIHKDFNTQSHPSLSIDPFKFDVPSPDDVVFTGLHSSKKGLKDKVKNSKDSQLSSSSREKKELAVESNAESLDNLSSLMQKNKQDSAAKNKLSKNVEINLETIGETLNSLSSSLPKNKGDNANRINSSKNGTNGTRSNKEKSGSLSALPKVEKSDKLSLSSNKDGKSESASSSSTHMVLDERSGKSDNTNAKGPHKQVTYQPEKWMLPQQSEDTLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAKLQGKGSFAYAWALDESSEERERGITMTVAVAYFDTKKYHVVVLDSPGHKDFIPNMISGATQADAAILVIDASLGAFEAGMDGGKGQTREHAQLIRSFGVDHVIVAVNKMDAVAFSKDRFDFIRHQLGTFLRSCGFKDSSLSWIPLSAMENQNLVASPSDAHFKNWYTGPYLLDAIDSLQPPTREFAKPLLMPICDIIKSTAQGQVSACGKLEAGALRSGTKVLVMPSDVVGTVRTLERDSNACSVARAGDNVAVTLQGVDGSHVFSGGVLCHPDFPVAIAKHLELKLLVLDGASPILVGAQLEFHIHHAKEPARVSKILSVLDPKTGKVTKKSPRCLTSKQSAVIEVILHEPVCVVEFSRCKALGRVSLRSLGRTIAVGLVTRIIEEQG 790
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04730 790 Gene3D Translation factors 680 789 - -
Trre8g04730 790 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 682 786 IPR009001 -
Trre8g04730 790 MobiDBLite consensus disorder prediction 1 20 - -
Trre8g04730 790 Pfam Elongation factor Tu C-terminal domain 685 785 IPR004160 -
Trre8g04730 790 FunFam elongation factor 1-alpha isoform X4 680 789 - -
Trre8g04730 790 SUPERFAMILY Translation proteins 581 676 IPR009000 -
Trre8g04730 790 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 359 590 IPR000795 GO:0003924|GO:0005525
Trre8g04730 790 Gene3D - 42 87 - -
Trre8g04730 790 PANTHER TRANSLATION FACTOR 357 785 - -
Trre8g04730 790 MobiDBLite consensus disorder prediction 253 288 - -
Trre8g04730 790 FunFam Elongation factor 1 alpha-like protein 351 583 - -
Trre8g04730 790 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 604 IPR027417 -
Trre8g04730 790 ProSiteProfiles Zinc finger RanBP2 type profile. 46 75 IPR001876 -
Trre8g04730 790 PRINTS GTP-binding elongation factor signature 458 469 IPR000795 GO:0003924|GO:0005525
Trre8g04730 790 PRINTS GTP-binding elongation factor signature 442 452 IPR000795 GO:0003924|GO:0005525
Trre8g04730 790 PRINTS GTP-binding elongation factor signature 503 512 IPR000795 GO:0003924|GO:0005525
Trre8g04730 790 PRINTS GTP-binding elongation factor signature 363 376 IPR000795 GO:0003924|GO:0005525
Trre8g04730 790 PRINTS GTP-binding elongation factor signature 422 430 IPR000795 GO:0003924|GO:0005525
Trre8g04730 790 MobiDBLite consensus disorder prediction 253 345 - -
Trre8g04730 790 SUPERFAMILY Ran binding protein zinc finger-like 48 73 IPR036443 -
Trre8g04730 790 Gene3D Translation factors 587 676 - -
Trre8g04730 790 MobiDBLite consensus disorder prediction 307 323 - -
Trre8g04730 790 Pfam Elongation factor Tu GTP binding domain 362 578 IPR000795 GO:0003924|GO:0005525
Trre8g04730 790 MobiDBLite consensus disorder prediction 185 211 - -
Trre8g04730 790 CDD HBS1_C_III 677 785 - -
Trre8g04730 790 Gene3D - 350 583 IPR027417 -
Trre8g04730 790 CDD EF1_alpha 363 582 - -
Trre8g04730 790 SMART zf_4 48 72 IPR001876 -
Trre8g04730 790 FunFam Translation elongation factor EF-1 586 676 - -
Trre8g04730 790 ProSitePatterns Zinc finger RanBP2-type signature. 50 69 IPR001876 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04730 Trre-Chr8 50858730 50866940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04730 48 85 Eukaryotic Initiation Factors Gene Family AT5G10630 63.158 1.09e-11 66.6