Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04729 ATGGGAATCCATGGTCTGTTACCGCTACTCAAATCCATAATGATTCCAATTCACATCAAAGACCTTCACGGCTGTTCTGTCGCCATCGATACCTATTCTTGGCTCCACAAAGGCGCCCTTTCTTGCAGCACTGACCTCTGTAAAGGAATACCCACTTCTAGGCACATTGAGTATTGTATGCATAGAGTGAATCTGCTTCGCCATTATGGTGTTAAACCTATTCTTGTTTTTGATGGAGGTCTTTTACCAATGAAGATTGAACAAGAGAATAAGCGTGCAAGGTCTAGAAAGGATAACTTTGAACGTGCAGTTGAACATGAATCAAACGGCAATTCTTCAGCTGCGTATGAATGCTACCAGAAAGCTGTTGATATTTCACCTACCATTGCGCGAGAACTGATTCAGGTATTGAAGCAGGAGAATGTGCAGTATATTGTTGCTCCTTACGAGGCAGATGCTCAAATGACATTCTTGGCAGTTAGCAGACAGGTTGATGCAGTTATAACTGAAGACTCTGATCTTATACCATTTGGTTGCCCAAGAATTATCTTTAAAATGGACAAGTTTGGCCAAGGTGTTCAGTTTCAGTATTCCATGCTACTAAAGAATAAGGAGCTTAATTTTGAAGGGTTCAACAAACAAATGCTTCTTGAAATGTGTATTTTGAGTGGCTGTGACTATCTTCAGTCCTTGCCAGGTATGGGTCTCAAAAAGGCTCATGCAAGTATTAAAAGATTTAAAAGTTATGACAAGGTTCTTAAGCACTTGAAATACAATGGTGTGTCTGTACCTCCCTTTTATGAAGAGTCGTTCAGGAAGGCTATACGTACTTTCCAATATCAACGAGTTTATGATCCAGTCAGTGAAAATATTGTCCACTTGGCTACTTTACCTGAGGATATTGATATAGCACAAGGAATAGCAGAAGGTGATCTTGATCCAATTACCAAAATGCCATTTGAGGGAGAAAAGTTTGTTGCCAGAATGGAAATTGCAGGAACTAGTCAATTTAAAACACTCAATTCTGAGAGGGTGAAGAAAAGGATTGATCTGCCTGTGCAGAAGAATCTCTTGACCAAGTATTTTTCCGTGGAAGGTTTTGCATCTCTTGAAGCAAAGAGGGAATTCAAAGCGCCTAGAACGTCACCTACTACTACTAATCAAAGTGCACTGATTTCCTCTTCTGTCAATTCCCTAGAACATCAGATTTTAGAAGCTGCTGCTTGTGAAACAATGAACTCTCCTGCATCCACAGTTGACCCTGAGAGTTGTGGCAGCGACTCTCCTCCTAATCACTATATTGAAAACCATTTTTCCACCAAAAGTCCAGAGCTTATAGAATCACAATATCATGTATCTATTGCAGGAGAGATGAAGGGAAGTCCTGATCATACAATATTGAGACAGCCCAAGCAGTCAATTCATAAACCTTGTCTGGGGTTACACAAAGATCACGAGCTCACAAATGTCCATAACAAAGTCGAAGAAAAAACCAAGGAGACAAAAAGAAGGGTAATTGTAAGGAGTCCTTATTTTCAGCAGAAGCAAGTAGAAAAGAGTGCTAGTGATGAGAAACAAGAGCAGGTGTCCTCTGGCATCGTCATTGATGAGAGAAAAAATGCCATATATGGCGGAGATTTATGTAACAACCAATTGAAGACTAAAGACTTGAAAAGGAAGGTCTCCCCTAATGATAGTATTCAAAGTGAAAATTTGCAGGCCAGGCAAATGCATCCTACTTCATCTACTTATGATAATGGTTGCTCCGATGATAATGTTGAAGAAGAAAAATTTGGGACAAACATTTCCCATTTAGGCCATTATTCAAAAATAGCTGAGAAGTCTTTGGACAGATTTACCTCGGTAATATCGGCTTTTAAATATACCTCTGGCTCTCGTGTCAGTGGTCTCCGTGCTCCTCTGAAAGATGTCCGCAACATCCGTAATAATAGGCCAGCAGCTGTGGATATCAGCCAATTTGCATATGTGCCAAAACCAACAAAGACTAGAAGAGTAGCTCCTGATACTCACAACACTTGTAAAACTAGGCCAACAGCTGTGGACTTGAACCAATATGCATATGTGCCAAAACAAAGACTAGAAGAATAG 2109 0.4021 MGIHGLLPLLKSIMIPIHIKDLHGCSVAIDTYSWLHKGALSCSTDLCKGIPTSRHIEYCMHRVNLLRHYGVKPILVFDGGLLPMKIEQENKRARSRKDNFERAVEHESNGNSSAAYECYQKAVDISPTIARELIQVLKQENVQYIVAPYEADAQMTFLAVSRQVDAVITEDSDLIPFGCPRIIFKMDKFGQGVQFQYSMLLKNKELNFEGFNKQMLLEMCILSGCDYLQSLPGMGLKKAHASIKRFKSYDKVLKHLKYNGVSVPPFYEESFRKAIRTFQYQRVYDPVSENIVHLATLPEDIDIAQGIAEGDLDPITKMPFEGEKFVARMEIAGTSQFKTLNSERVKKRIDLPVQKNLLTKYFSVEGFASLEAKREFKAPRTSPTTTNQSALISSSVNSLEHQILEAAACETMNSPASTVDPESCGSDSPPNHYIENHFSTKSPELIESQYHVSIAGEMKGSPDHTILRQPKQSIHKPCLGLHKDHELTNVHNKVEEKTKETKRRVIVRSPYFQQKQVEKSASDEKQEQVSSGIVIDERKNAIYGGDLCNNQLKTKDLKRKVSPNDSIQSENLQARQMHPTSSTYDNGCSDDNVEEEKFGTNISHLGHYSKIAEKSLDRFTSVISAFKYTSGSRVSGLRAPLKDVRNIRNNRPAAVDISQFAYVPKPTKTRRVAPDTHNTCKTRPTAVDLNQYAYVPKQRLEE 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04729 702 CDD H3TH_EXO1 214 285 IPR037315 GO:0003677|GO:0035312
Trre8g04729 702 CDD PIN_EXO1 1 202 IPR044752 GO:0046872
Trre8g04729 702 FunFam Exonuclease 1, putative 1 207 - -
Trre8g04729 702 SMART xpgineu 138 208 IPR006086 GO:0004518
Trre8g04729 702 SMART HhH_4 213 246 IPR008918 GO:0003677|GO:0003824
Trre8g04729 702 MobiDBLite consensus disorder prediction 564 586 - -
Trre8g04729 702 SMART xpgn3 1 99 IPR006085 GO:0004518
Trre8g04729 702 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 212 321 IPR036279 -
Trre8g04729 702 Gene3D - 1 207 - -
Trre8g04729 702 Pfam XPG N-terminal domain 1 98 IPR006085 GO:0004518
Trre8g04729 702 MobiDBLite consensus disorder prediction 559 586 - -
Trre8g04729 702 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 424 IPR006084 -
Trre8g04729 702 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Trre8g04729 702 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 216 231 IPR006084 -
Trre8g04729 702 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 137 154 IPR006084 -
Trre8g04729 702 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 73 92 IPR006084 -
Trre8g04729 702 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 158 178 IPR006084 -
Trre8g04729 702 Gene3D - 209 281 - -
Trre8g04729 702 ProSitePatterns XPG protein signature 1. 71 85 IPR019974 GO:0016788
Trre8g04729 702 FunFam exonuclease 1 209 281 - -
Trre8g04729 702 Pfam XPG I-region 141 226 IPR006086 GO:0004518
Trre8g04729 702 SUPERFAMILY PIN domain-like 2 226 IPR029060 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04729 Trre-Chr8 50851391 50856696 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04729 1 264 Core DNA Replication Machinery Family AT5G26680 25.632 1.14e-17 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04729 K10746 - gmx:100798062 823.542