Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04705 ATGGGTGACAATTCAGTTAACAATGGAACCAATGAGGTTGTTTTGAATGTAAACAACGATGTCCTTAATGTAACTCAAGACTCAACCTCCTATGCCATTGCTTCTTTCTTGCAAAAGTTGGTAGCTGAGGTGGTAGGCACATATTTCTTGATATTTGCCGGTTGTGCTGCTGTCGCGGTGAACAAGAACAACGATAGCGTGGTGACGCTTCCCGGAATTTCAATTGTTTGGGGACTTGCTGTAATGGTGTTAGTTTACTCTCTTGGTCACATCTCTGGTGCTCATTTCAATCCTGCAGTTACAATTGCTTTTGCTACCACAAGAAGGTTTCCCTTGAAACAGGTACCAGCTTATGTAGCAGCTCAAGTCCTTGGATCTACACTTGCAAGTGGAACTCTTAGACTATTATTTAGTGGCAAAGATAATCAGTTTGTAGGAACACTTGCAGCTGGGTCTAATCTTCAAGCTTTTGTGATTGAATTCATAATCACTTTTTATCTTATGTTTATCATATCTGGAGTTGCCACTGATAATAGAGCAATTGGTGAATTGGCTGGGATTGCTGTTGGATCTACAGTACTTTTGAATGTGATGTTTGCAGGGCCAATCACAGGAGCATCAATGAATCCAGCAAGAAGTATAGGACCTGCAATTATACACAATGAATACAAAGGAATATGGATATACTTAGTGTCTCCAATTCTAGGAGCCGTGGCCGGCGCATGGGTTTATAACGTCATTCGGTACACGGATAAGCCGGTTCGTGAGATCACCAAGAGTGCATCTTTCCTTAAAGCTGCAAAGCCATAG 810 0.4173 MGDNSVNNGTNEVVLNVNNDVLNVTQDSTSYAIASFLQKLVAEVVGTYFLIFAGCAAVAVNKNNDSVVTLPGISIVWGLAVMVLVYSLGHISGAHFNPAVTIAFATTRRFPLKQVPAYVAAQVLGSTLASGTLRLLFSGKDNQFVGTLAAGSNLQAFVIEFIITFYLMFIISGVATDNRAIGELAGIAVGSTVLLNVMFAGPITGASMNPARSIGPAIIHNEYKGIWIYLVSPILGAVAGAWVYNVIRYTDKPVREITKSASFLKAAKP 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04705 269 PRINTS Major intrinsic protein family signature 190 212 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04705 269 PRINTS Major intrinsic protein family signature 114 133 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04705 269 PRINTS Major intrinsic protein family signature 159 177 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04705 269 PRINTS Major intrinsic protein family signature 227 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04705 269 PRINTS Major intrinsic protein family signature 38 57 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04705 269 PRINTS Major intrinsic protein family signature 77 101 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04705 269 Pfam Major intrinsic protein 34 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04705 269 NCBIfam MIP family channel protein 42 244 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04705 269 SUPERFAMILY Aquaporin-like 33 258 IPR023271 -
Trre8g04705 269 ProSitePatterns MIP family signature. 95 103 IPR022357 -
Trre8g04705 269 Gene3D Glycerol uptake facilitator protein. 3 259 IPR023271 -
Trre8g04705 269 CDD MIP 38 247 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04705 269 PANTHER AQUAPORIN NIP2-1 29 264 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04705 Trre-Chr8 50687617 50689699 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04705 28 269 Major Intrinsic Protein MIP AT5G37810 60.744 1.64e-107 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04705 K09874 - gmx:100798526 435.261