Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04704 ATGTCTAGTATAACCGATGATGCCGTTTTAGAAGTAAGCAAGGATTCCACCCAAACATGTCAAGACTCTGACTCCGTTGTCTCTGTTCCTTTCTTGCAAAAGTTAATAGCAGAGTTGGTGGGCACATATTTCTTGATATTTGCAGGATGTGCTTCAATTGTAGTGAACAAGAACAATGACAACGTGGTCACACTTCCTGGAATAGCAATTGTTTGGGGACTTGCTGTGGTGGTATTGGTTTACTCTCTTGGTCATATCTCTGGTGCCCATTTCAATCCTGCTGTTACTATTGCTTTTGCTACTACAAGGAGGTTTCCATTGTTACAGGTGCCAGCTTATATATCAGCTCAACTTCTGGGAGGTACACTTGCTAGTGGAACTCTAAAACTAATTTTCAGTGGCAATGATGATCAGTTTCCAGGAACAATTCCATCTGGTTCTTGCCTTCAAGCTTTTGCACTTGAATTCATAGTCACATTTTACCTTATGTTTGTTATTTCTGGAGTTGCCACTGATAATAGAGCGATTGGTGAGTTGGCTGGAATTGCAATTGGGTCTACATTATTGGTTAATGTGATTATTTCAGGACCAATAACAGGAGCGTCGATGAACCCAGTTAGAAGCCTAGGACCGGCTTTTGTACACAATAAATACACAGGAATATGGGTATATATAGTGTCACCAATTTTAGGGGCTGTGGCCGGAACATGGGCTTATAATACCGTTAGATACACTAACAAGTCCGTTCGTGAGATTACCAAGAGTGCTTCCTTCCTCAAAGAAGCGGGGCGTGGTGGGCGCCAAGTAGTTTAA 813 0.4194 MSSITDDAVLEVSKDSTQTCQDSDSVVSVPFLQKLIAELVGTYFLIFAGCASIVVNKNNDNVVTLPGIAIVWGLAVVVLVYSLGHISGAHFNPAVTIAFATTRRFPLLQVPAYISAQLLGGTLASGTLKLIFSGNDDQFPGTIPSGSCLQAFALEFIVTFYLMFVISGVATDNRAIGELAGIAIGSTLLVNVIISGPITGASMNPVRSLGPAFVHNKYTGIWVYIVSPILGAVAGTWAYNTVRYTNKSVREITKSASFLKEAGRGGRQVV 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04704 270 PANTHER AQUAPORIN NIP2-1 18 259 IPR034294 -
Trre8g04704 270 CDD MIP 33 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04704 270 Gene3D Glycerol uptake facilitator protein. 2 255 IPR023271 -
Trre8g04704 270 SUPERFAMILY Aquaporin-like 27 252 IPR023271 -
Trre8g04704 270 PRINTS Major intrinsic protein family signature 154 172 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04704 270 PRINTS Major intrinsic protein family signature 185 207 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04704 270 PRINTS Major intrinsic protein family signature 33 52 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04704 270 PRINTS Major intrinsic protein family signature 72 96 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04704 270 PRINTS Major intrinsic protein family signature 109 128 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04704 270 PRINTS Major intrinsic protein family signature 222 242 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04704 270 ProSitePatterns MIP family signature. 90 98 IPR022357 -
Trre8g04704 270 Pfam Major intrinsic protein 27 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
Trre8g04704 270 NCBIfam MIP family channel protein 37 239 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04704 Trre-Chr8 50682941 50685359 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04704 3 260 Major Intrinsic Protein MIP AT5G37810 54.167 2.55e-100 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04704 K09874 - gmx:100813448 408.297