LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre8g04694	ATGGATGAAGCAGGAAGTTCAAGTTCCTTGCCTCCTTTTCTGGCAAAGACTTATGAGATGGTAGATGATCCTTCCTCGGATCCTATCGTTTCGTGGAGTATGAGTAACAAAAGTTTTGTGGTATGGAATCCTCCAGAATTTGCAAGGGTTTTGCTTCCTAGATTCTTTAAGCACAATAACTTCTCCAGTTTTATCAGGCAGCTGAATACATATGGATTTAGGAAAGTTGATCCAGAACAATGGGAGTTTGCCAATGACGATTTTATAAAGGGGCAACCTCATCTTTTGAAGAATATTCATAGAAGAAAGCCGGTTCATAGCCATTCACTCCAAAATCTTCAAGCACAAGCGCCTCTATCGGAGTCTGAAAGGCAAAGTTTGAATGATGAAATAGAGAAGCTGAAACAAGACAGAGAACAACTCGTCTCAGAGATAAAGAGATACCAACATGAGTGTCAAACCTATGAGATTCAAATTCATTGCTCGAAAGATCGGTTGGAGAAGTTGGAGCAAAATCAACAGAAGATGGTGTCTTCTGTTTCTCAAGTACTTCAGAAGCCTGTGAATGCTGTAAGTCTCTTGTCACTGACAGAAACCATGGATAGAAAACGAAGGTTGCCAGTGAGAAGTGGCGGCTTTAATAATGAAGCTAGCGTTGAAGATGCTATGGAAACTTCTGTAGCTTTGCCCGGAGAAAATGCAGAGGGTTCCTCTATTTTGACATTAAACACAGAGAGATTGGATCAACTTGAGTCATCCGTGTTATTTTGGGAGACTATTGCACGGGAAGTTGCCGACAGCCTTCACACTCATTCAAACATTGATTTTGATGAATCTACAAGCTGTGCTGATAGTTTGTCTATATCTTGTCGGCAAATAGATGTTGAAGTTCGACCTAAGTCACCCGAAATTGACATGAACTCTGAACCAGCTGCTGCTGCTCCTGAGACTGTTGCATCAAAAGAACAACCAGCGGGTATTGCCACTGCAGCAACTGGGGTTAATGATGTATTTTGGGAACAGTTCTTGACAGAGGATCCTGGTGCATCAGAAGCACAGGAAGTACAATCAGAAAGAAAGGAAAATAATAGCAGAAAAAATGAAGGAAAACCTGGTGATCACGGAAGATTTTGGTGGAATATGAGGAAAGGAAATAATCTTCCAGAACAGATGGGGAATGTTGGTCAAGTAGAGAAAATTTAG	1203	0.4115	MDEAGSSSSLPPFLAKTYEMVDDPSSDPIVSWSMSNKSFVVWNPPEFARVLLPRFFKHNNFSSFIRQLNTYGFRKVDPEQWEFANDDFIKGQPHLLKNIHRRKPVHSHSLQNLQAQAPLSESERQSLNDEIEKLKQDREQLVSEIKRYQHECQTYEIQIHCSKDRLEKLEQNQQKMVSSVSQVLQKPVNAVSLLSLTETMDRKRRLPVRSGGFNNEASVEDAMETSVALPGENAEGSSILTLNTERLDQLESSVLFWETIAREVADSLHTHSNIDFDESTSCADSLSISCRQIDVEVRPKSPEIDMNSEPAAAAPETVASKEQPAGIATAATGVNDVFWEQFLTEDPGASEAQEVQSERKENNSRKNEGKPGDHGRFWWNMRKGNNLPEQMGNVGQVEKI	400

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre8g04694	400	PRINTS	Heat shock factor (HSF) domain signature	13	36	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre8g04694	400	PRINTS	Heat shock factor (HSF) domain signature	51	63	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre8g04694	400	PRINTS	Heat shock factor (HSF) domain signature	64	76	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre8g04694	400	MobiDBLite	consensus disorder prediction	346	400	-	-
	Trre8g04694	400	Gene3D	-	5	103	IPR036388	-
	Trre8g04694	400	ProSitePatterns	HSF-type DNA-binding domain signature.	52	76	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre8g04694	400	MobiDBLite	consensus disorder prediction	352	377	-	-
	Trre8g04694	400	SMART	hsfneu3	9	102	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Trre8g04694	400	SUPERFAMILY	"Winged helix" DNA-binding domain	8	102	IPR036390	-
	Trre8g04694	400	FunFam	Heat shock transcription factor 1	6	103	-	-
	Trre8g04694	400	Coils	Coil	110	172	-	-
	Trre8g04694	400	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	6	232	IPR027725	-
	Trre8g04694	400	Pfam	HSF-type DNA-binding	13	102	IPR000232	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre8g04694	Trre-Chr8	50602091	50603403	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre8g04694	1	399	HSF	AT4G18880	49.757	9.77e-115	339

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Trre8g04694		HSF_DNA-bind	4e-31	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre8g04694	K09419		-	gmx:100798004	629.787