Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04684 ATGCTTCATGAAAGAGAATGCATCTCTATTCTCATTCTCTTCATGATATCCACTTTTTTCTTACCAACCTTAAATGCTGACACAGATGCTCAAATACTAATGAATTTCAAAAGCTTTTTGTCTAATGCAGATGCATTAAACAATTGGAGTAACAATTCTATTAATGTTTGCACATGGAAAGGTTTAATATGCAAAGATCAAACACTTCATGGTTTGAGACTAGAGAATATGGGACTAAGTGGAACAATTAATGTAGACATACTTATGAATTTGTCCACTTTGAGAAGTTTTAGTGTCATTAATAATAATTTTGAGGGTCCATTTCCTGCATTTAATAAACTTGTGGGATTAAGGGCATTGTTTTTGACTAATAATAAATTCTCTGGTGAAATTTCTGATGATGCTTTTGAAGGGTTAAGAAGGCTTAGGAGAGTAGTCTTAGCAGAAAATGAATTTAAGGGTCATATTCCTAGTTCTCTTGCTCAATTGCCTAGACTTTATGATGTTGATTTACATGGAAATAGCTTTGATGGTAATATACCACAATTTCTACAAAGGGATTTCAGAGTGTTTAACTTGTCTAACAATCAATTGGATGGTGCAATACCACAAAGCTTAAGTAATCAAGATCCAAGTTCTTTTGCAGGCAACAAAGATCTGTGTGGAAATCCTCTAAGTATCCCTTGCAGCAAAAGCCAAAGCCATGAAGAAGAAAAACCAGAAGAACACAAGCCACGCCGTGTCCTTATTAGTGTTATTGTATTTGTGATTGTGCTTGTATTGGCTTTCATACTAGCACTCTTATTCATCCGTTACCGTAGAAAGAAAGCTGCGGCAAAATCCAATTGGAATGTGGAGAATTCACAATCACAGTCTCAGAACACAAATGCTAGTATAGTTTCAACTAGTGGAGCCAAATCAATTACAATTGAATCCAAGAAAAACAAAGATGAAGATTTGAACTTCGTTAGCAACGAAAGAGTTGAGTTTGATTTGCAAGATTTGTTAAGAGCCTCAGCTGAGGTTTTGGGAAGTGGAAGTTTTGGATCAACATATAAGGCTATGGTATTGAGTGGACCAGTTGTGGTTGTGAAAAGATTTAAGCACATGAACAAAGTTGGTAAAAAAGAGTTCTATGATCATATGAGAAGGCTTGGAAGTTTGGCACATCCTAATCTACTTCCTCTTGTTGCATTCTACTATGGAAAAGAAGAGAAACTTTTGATACATGATTTTGCAGAAAATGGTAGCTTGGCTAGTCATCTTCATGGTAAACATGGTTGTGAGTTGGATTGGCCAACACGTTTGAAGATAATAAAAGGAGTGGCTAGAGGTTTAGCTTACCTTTATAGAGAGTTTCCCGACGAAAAGCTACCTCATGGACATCTAAAATCGTCGAATGTTGTGTTAGACCATTCATTCGAGCCTCGTATAACTGAGTATGGACTCGTAGCGGTAACTGATTCAAAACATGCTCAGCAGTTCATGGTAGGTTTCAAGTCTCCAGAGGTGAGTCAAAATGAAGGTCCAAGCGAGAAGAGCGATATATGGTGTTTAGGGATACTAATATTGGAGCTATTGACAGGGAAGTTCCCTGCAAATTATTTGAGGCACGGGAAGGGAGCGACGGAGGATTTGGCAATGTGGGTGGAATCTATAGTAAGGGAAGGGTGGAGTGGAGAAGTGTTGGATAAAAGCATTGGTGGAAGTAGGGGTGAAGAGGGTGAAATGTTGAAGTTGTTGAGGATTGGGATGAGTTGTTGTGAATGGAGTTTGGAGAATAGGTTTGATTGGATGGAAGCAGTGGCTAAGATTGAGGAGTTGAAGGAAATGGATCATGTTGGTGTTGGAGTTCATCAGAGTCAGGATTCTGAATTGTCTCTTTGA 1887 0.38 MLHERECISILILFMISTFFLPTLNADTDAQILMNFKSFLSNADALNNWSNNSINVCTWKGLICKDQTLHGLRLENMGLSGTINVDILMNLSTLRSFSVINNNFEGPFPAFNKLVGLRALFLTNNKFSGEISDDAFEGLRRLRRVVLAENEFKGHIPSSLAQLPRLYDVDLHGNSFDGNIPQFLQRDFRVFNLSNNQLDGAIPQSLSNQDPSSFAGNKDLCGNPLSIPCSKSQSHEEEKPEEHKPRRVLISVIVFVIVLVLAFILALLFIRYRRKKAAAKSNWNVENSQSQSQNTNASIVSTSGAKSITIESKKNKDEDLNFVSNERVEFDLQDLLRASAEVLGSGSFGSTYKAMVLSGPVVVVKRFKHMNKVGKKEFYDHMRRLGSLAHPNLLPLVAFYYGKEEKLLIHDFAENGSLASHLHGKHGCELDWPTRLKIIKGVARGLAYLYREFPDEKLPHGHLKSSNVVLDHSFEPRITEYGLVAVTDSKHAQQFMVGFKSPEVSQNEGPSEKSDIWCLGILILELLTGKFPANYLRHGKGATEDLAMWVESIVREGWSGEVLDKSIGGSRGEEGEMLKLLRIGMSCCEWSLENRFDWMEAVAKIEELKEMDHVGVGVHQSQDSELSL 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04684 628 ProSitePatterns Protein kinases ATP-binding region signature. 343 365 IPR017441 GO:0005524
Trre8g04684 628 FunFam pollen receptor-like kinase 1 306 412 - -
Trre8g04684 628 SUPERFAMILY Protein kinase-like (PK-like) 341 608 IPR011009 -
Trre8g04684 628 SUPERFAMILY L domain-like 35 209 - -
Trre8g04684 628 ProSiteProfiles Protein kinase domain profile. 337 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04684 628 Gene3D Transferase(Phosphotransferase) domain 1 413 623 - -
Trre8g04684 628 Gene3D Phosphorylase Kinase; domain 1 302 412 - -
Trre8g04684 628 Pfam Leucine rich repeat 117 175 IPR001611 GO:0005515
Trre8g04684 628 Gene3D Ribonuclease Inhibitor 27 135 IPR032675 -
Trre8g04684 628 Pfam Protein kinase domain 340 535 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04684 628 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 13 610 IPR046959 -
Trre8g04684 628 Gene3D Ribonuclease Inhibitor 136 233 IPR032675 -
Trre8g04684 628 Pfam Leucine rich repeat N-terminal domain 26 64 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04684 Trre-Chr8 50573353 50575922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04684 13 608 Receptor kinase-like Gene Family AT4G31250 45.283 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre8g04684 Pkinase 3.2e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04684 - - tpra:123914566 1113.6