Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04676 ATGAAAAGTAAATTCAAAAATCAATATACTCAACAAGAAGAAGACACTGACACATCTCAAGATTCACCTCCTTCTTCCGCTTCATTTGATATCGATGCCTCACTCACTTCCATCTCTTCTTCATCATCTAAGAAAAGGCGAGCCATACAGAAAAGGGTGGTGCAAATTCCAATCAAAGAACCTCAAGGATCAAGACTAAAAGGAGAGAGCAATACTCCACCTTCCGATTCATGGGCATGGAGAAAATACGGTCAGAAACCTATCAAAGGTTCCCCATATCCCAGAGCCTACTACAGGTGCAGCAGTTGCAAAGGTTGTCCAGCAAGGAAACAAGTGGAGAGAAGCCGAGTGGACCCCACAATGCTCGTCATAACATACTCCTCAGACCACAACCACTCATGGCCGGTTTCAAGAAATAATTCAAAAAGACTTGCCGCCAAGAAAACTGAACTAGAACCGGTCGAACCGGACAAGAAATTTGCCGGCCACTTAGTTGTGGACGACGAGTTAGGGTGGTTGGGAGAGATTGACACAACCTCGTCCGCTATTCTGGAGAGTCCAATTATGGCGGAGTTCGATGCTGACATGGCATCCATGTTGTTGCCAATGGAGGAAGAGGATGCTTTGCTATTCGCTGATCTTGGAGAATTGCCAGAGTGTTCCACGGTGTTCCGGCATGGGTTGTTCGACGCGCGGCAGCGGTTAACGGCACCGTGA 717 0.4714 MKSKFKNQYTQQEEDTDTSQDSPPSSASFDIDASLTSISSSSSKKRRAIQKRVVQIPIKEPQGSRLKGESNTPPSDSWAWRKYGQKPIKGSPYPRAYYRCSSCKGCPARKQVERSRVDPTMLVITYSSDHNHSWPVSRNNSKRLAAKKTELEPVEPDKKFAGHLVVDDELGWLGEIDTTSSAILESPIMAEFDADMASMLLPMEEEDALLFADLGELPECSTVFRHGLFDARQRLTAP 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04676 238 SMART WRKY_cls 74 134 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g04676 238 SUPERFAMILY WRKY DNA-binding domain 72 135 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g04676 238 Gene3D WRKY domain 64 136 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre8g04676 238 ProSiteProfiles WRKY domain profile. 75 135 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g04676 238 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 11 222 IPR044810 GO:0003700
Trre8g04676 238 MobiDBLite consensus disorder prediction 1 82 - -
Trre8g04676 238 Pfam WRKY DNA -binding domain 76 132 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre8g04676 238 MobiDBLite consensus disorder prediction 1 44 - -
Trre8g04676 238 FunFam WRKY transcription factor 65 43 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04676 Trre-Chr8 50513203 50514237 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04676 9 226 WRKY Transcription Factor Family AT1G29280 53.750 2.16e-74 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre8g04676 WRKY 1.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04676 - - cam:101493438 341.658