Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04664 ATGGATCCAGCAACAAGCAAAGGTAGTGGTGAAATGTTGGCTCATGTTGATAAAGGGGTTAATGAGAATTTGAGTCATTTGGTTGAAGGAGTTGCAACTGATTCAGGAGCTGGATGTAGCTTGGGTGATAGGGTTAGTGTCTGCGGTGAAGATCGGAATTCAGAAGAGACTTGTAGCAATGATCTTGGATTGAATGAGGAGTTAAAGGAGAGATCTTTAGAAGATAAGGGTCAGAATCAGAATGTTGGTGTTGATCCCAGAAAAATCAACGATGAATTGCACGTTATTGATCAAGGGACTAGTTATAATTCAAGTAATTCGGTTAATGGGGAAGCACTTGAGACCTGTGTTGTAGTAGTTTCTTCTGCTCGGGTTGAGTGTATTAATGGTGGAGATAATAGAAAATTGGAAGCTAAATCTAATGAATCGGGGCTGCACATGTTAACGATTAAAACACCTAAAGGGGTATCTGAAACTGATAAAAATTCATGTGTGATTGATATGAATTGTGGCAGCTACAAAGATTTTAGCGAGAATTCTGATGGTGAAATGATTTGTAGGATTTGCCATCTGGCCTCTGGGCAACCGTTAGAAGCAACTGCTGTCGGAACTCCAAATAGTGTTAATAATGATGATAAAACAGGTTTGATTATGCTTGGTTGTGCATGTAAAGATGAGCTAGGCATTGCACATAGTCATTGCGCTGAGGCATGGTTCAAGATTAAAGGAAACCGGTTGTGCGAAATATGCGGTGAGACAGCAAAAAATATTTCCGAAGTTACTGATAATGGATTTATGGAAGAATGGTGTGAAAGTGGATTCATCGATGATGGTACTACATCACGCCACAGCTTGGTTGGATGCTGGACCGGGCAGCCATTCTGTAACTTCTTGATGGCATGCCTAGTAATAGCTTTTGTTCTGCCATGGTTCTTTCGTGTAAAGATGTTCTAG 954 0.4057 MDPATSKGSGEMLAHVDKGVNENLSHLVEGVATDSGAGCSLGDRVSVCGEDRNSEETCSNDLGLNEELKERSLEDKGQNQNVGVDPRKINDELHVIDQGTSYNSSNSVNGEALETCVVVVSSARVECINGGDNRKLEAKSNESGLHMLTIKTPKGVSETDKNSCVIDMNCGSYKDFSENSDGEMICRICHLASGQPLEATAVGTPNSVNNDDKTGLIMLGCACKDELGIAHSHCAEAWFKIKGNRLCEICGETAKNISEVTDNGFMEEWCESGFIDDGTTSRHSLVGCWTGQPFCNFLMACLVIAFVLPWFFRVKMF 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04664 317 PANTHER ZINC FINGER, RING-CH-TYPE 44 317 - -
Trre8g04664 317 ProSiteProfiles Zinc finger RING-CH-type profile. 178 257 IPR011016 GO:0008270
Trre8g04664 317 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 170 262 IPR013083 -
Trre8g04664 317 SUPERFAMILY RING/U-box 182 253 - -
Trre8g04664 317 SMART ringv_2 185 251 IPR011016 GO:0008270
Trre8g04664 317 Pfam RING-variant domain 212 250 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04664 Trre-Chr8 50397844 50399607 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04664 166 312 C3H Transcription Factor Family AT5G05830 39.610 9.83e-26 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04664 - - gmx:100791129 424.091