Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04662 ATGTCAAAGTTGCAAATTATTGATCTCTCTGAAAATTCTCTACAAGGCCATGTACCAAGCTGGTTTTGGTCTAGTTTTTCATCCTTATTGGAAGTAAATCTCTCAAGAAACAAATTCGGAGGAAGCATGAATAACATTAACACCTTGTTTTCAATTTCAACCATTCAAAAACTTAATCTCTCACACAATAGATTCAGTAACATAGTTCAACTTTCTAGCTTCCAAAACCTTAAAATCCTCGACCTTTCACATAACAACCTAAGAACATTTCCTTTAGGTTTTCAAAACCTCACCAAACTTCAACATCTTGATCTTTCAAGCTGCAATCTCAAAGATAGTATAAAACCTATTTCTTCTTTACACTCACTTGATTACTTAGATTTATCAAACAACAATTTAACCGGTAATTTCCCTTCTGATTTTCCACCACTTAAAAATCTCAAATTCCTCAACATTTCAAATAACAACTTCATCTATAACAACAAGACTCCAAACCAAAATCAAAATCAAGTCATCATTCATAGAAAACAAACCAAACCCAAATCAAAAAAATTGATTCTTGCACTATGTTCCACACTTGCAACACTTGTTATAGCGATAATTTCCATCTGGGTAATCCTAATTATTCACAGAAAGAGGAAACAATGTTCTAAGAAGAAGAAATGGGCAATCTCATTACCAGTTATGATGAACACGTTGAACACAAAGGTGGAAAAAACAGGGCCATTTGAATTTGAAACAGAGTCAGGTTCAACATGGGTAGCAGATGTGAAAGAACCAACATCTGCACCAGTAGTGATGTTTGAGAAGCCATTGATGAACTTCACCTTCAAGGATCTAATCATTGCCACGTCACATTTCGGGAAAGAATCACAGTTAGGAGAAGGAAGGTGTGGACCTGTGTATTGGGCTGTTTTACCTGCGAAGTTGAAACATCCTAATTTGTTGACTCTCTCTGGGTACTGTATTGCAGGTAAGAAGAAGCTAGTGCTATATGAGTTTATGGCAAACGGCAATTTAGGTCGATGGCTACATGAACTTCCAACAGGGGATACCAACATCGAGGATTGGACTGATGACACATGGGAGTTCCAAACCGGCGTGGTCGAAGCATCTCCAAAAAAGATGGGTTGGTTGACACGCCACCGTATTGCGGTGGGGATAGCACGTGGCCTCGCATATCTTCACCATGCGAGTTCAAAACCTATTGTGCATGGACACCTCGTCACCTCCAACATTTTGCTCACTGATAATTTTGAGCCTCGAATCTCTGATTTTGTACTTCAAATCAACTCAAGTTCCAATGTTGGCACTGAAGATGATGTGTACTGCTTTGGAGTGGTGTTGATGGAGCTACTTACCGGGAGGGTCGGCACAACAAAGACAATTGTTGCAGTTAAAAAGGCAGTGAGGGAGGAACAACACGTTAGAGTGCTTGATCAGAGGTTGCTACTCGAAGGCGACCCAATGGTGAGCGAGATGGTGGAGAGCCTCATAATCGCTTTTTTGTGCACGGCTGAGTCGCCTTCCAAGAGACCAACCATGCAACAAGTTTTGGGATTACTCAAAGATATTCATCCCCATGAACCATCATTCTAA 1599 0.3996 MSKLQIIDLSENSLQGHVPSWFWSSFSSLLEVNLSRNKFGGSMNNINTLFSISTIQKLNLSHNRFSNIVQLSSFQNLKILDLSHNNLRTFPLGFQNLTKLQHLDLSSCNLKDSIKPISSLHSLDYLDLSNNNLTGNFPSDFPPLKNLKFLNISNNNFIYNNKTPNQNQNQVIIHRKQTKPKSKKLILALCSTLATLVIAIISIWVILIIHRKRKQCSKKKKWAISLPVMMNTLNTKVEKTGPFEFETESGSTWVADVKEPTSAPVVMFEKPLMNFTFKDLIIATSHFGKESQLGEGRCGPVYWAVLPAKLKHPNLLTLSGYCIAGKKKLVLYEFMANGNLGRWLHELPTGDTNIEDWTDDTWEFQTGVVEASPKKMGWLTRHRIAVGIARGLAYLHHASSKPIVHGHLVTSNILLTDNFEPRISDFVLQINSSSNVGTEDDVYCFGVVLMELLTGRVGTTKTIVAVKKAVREEQHVRVLDQRLLLEGDPMVSEMVESLIIAFLCTAESPSKRPTMQQVLGLLKDIHPHEPSF 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04662 532 ProSiteProfiles Leucine-rich repeat profile. 54 75 IPR001611 GO:0005515
Trre8g04662 532 Pfam Protein tyrosine and serine/threonine kinase 309 431 IPR001245 GO:0004672|GO:0006468
Trre8g04662 532 SMART LRR_typ_2 74 96 IPR003591 -
Trre8g04662 532 SMART LRR_typ_2 120 143 IPR003591 -
Trre8g04662 532 SMART LRR_typ_2 1 24 IPR003591 -
Trre8g04662 532 Pfam Leucine rich repeat 54 110 IPR001611 GO:0005515
Trre8g04662 532 SUPERFAMILY L domain-like 2 160 - -
Trre8g04662 532 Gene3D Phosphorylase Kinase; domain 1 247 306 - -
Trre8g04662 532 SUPERFAMILY Protein kinase-like (PK-like) 275 522 IPR011009 -
Trre8g04662 532 ProSiteProfiles Leucine-rich repeat profile. 76 98 IPR001611 GO:0005515
Trre8g04662 532 Gene3D Phosphorylase Kinase; domain 1 307 338 - -
Trre8g04662 532 PRINTS Leucine-rich repeat signature 120 133 - -
Trre8g04662 532 PRINTS Leucine-rich repeat signature 77 90 - -
Trre8g04662 532 Gene3D Transferase(Phosphotransferase) domain 1 339 431 - -
Trre8g04662 532 FunFam Calmodulin-binding receptor kinase CaMRLK 53 161 - -
Trre8g04662 532 ProSiteProfiles Protein kinase domain profile. 243 529 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04662 532 Gene3D Transferase(Phosphotransferase) domain 1 432 529 - -
Trre8g04662 532 Gene3D Ribonuclease Inhibitor 1 196 IPR032675 -
Trre8g04662 532 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 2 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04662 Trre-Chr8 50338770 50341541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04662 1 525 Receptor kinase-like Gene Family AT5G07280 29.373 2.68e-59 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Trre8g04662 PK_Tyr_Ser-Thr 4.5e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04662 - - gmx:100809704 681.019