Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04661 ATGAAACCCTTTTACACATTCTTGATTCTCCTAACCTTGTTTTCTTCAGCACAATCTTCATGCAAAAGTAAAGACCAAAAATTAATTTCAAAAGCTTTCAAATCTGTCTCTGGCTTCAACTCTTCCACCTTTTTCCAAACAAGAATCTTGACATGTTCAGAATCTCATATCACTAAAATAATTCTTCCCTCCAAAAATCTAACCGGAACAATTTCATGGGGTTACCTCAAAAACATGTCAAAGTTGCAAATTATTGATCTCTCTGAAAATTCTCTACAAGGCCATGTACCAAGCTGGTTTTGGTCTAGTTTTTCATCCTTATTGGAAGTAAATCTCTCAAGAAACAAATTCGGAGGAAGCATGAATAACATTAACACCTTGTTTTCAATTTCAACCATTCAAAAACTTAATCTCTCACACAATAGATTCAGTAACATAGTTCAACTTTCTAGCTTCCAAAACCTTAAAATCCTCGACCTTTCACATAACAACCTAAGAACATTTCCTTTAGGTTTTCAAAACCTCACCAAACTTCAACATCTTGATCTTTCAAGCTGCAATCTCAAAGATAGTATAAAACCTATTTCTTCTTTACACTCACTTGATTACTTAGATTTATCAAACAACAATTTAACCGGTAATTTCCCTTCTGATTTTCCACCACTTAAAAATCTCAAATTCCTCAACATTTCAAATAACAACTTCATCTATAACAACAAGACTCCAAACCAAAATCAAAATCAAGTCATCATTCATAGAAAACAAACCAAACCCAAATCAAAAAAATTGATTCTTGCACTATGTTCCACACTTGCAACACTTGTTATAGCGATAATTTCCATCTGGGTAATCCTAATTATTCACAGAAAGAGGAAACAATGTTCTAAGAAGAAGAAATGGGCAATCTCATTACCAGTTATGATGAACACGTTGAACACAAAGGTGGAAAAAACAGGGCCATTTGAATTTGAAACAGAGTCAGGTTCAACATGGGTAGCAGATGTGAAAGAACCAACATCTGCACCAGTAGTGATGTTTGAGAAGCCATTGATGAACTTCACCTTCAAGGATCTAATCATTGCCACGTCACATTTCGGGAAAGAATCACAGTTAGGAGAAGGAAGGTGTGGACCTGTGTATTGGGCTGTTTTACCTGGTGAAATCCACGTGGCGATTAAGTTGAAACATCCTAATTTGTTGACTCTCTCTGGGTACTGTATTGCAGGTAAGAAGAAGCTAGTGCTATATGAGTTTATGGCAAACGGCAATTTAGGTCGATGGCTACATGAACTTCCAACAGGGGATACCAACATCGAGGATTGGACTGATGACACATGGGAGTTCCAAACCGGCGTGGTCGAAGCATCTCCAAAAAAGATGGGTTGGTTGACACGCCACCGTATTGCGGTGGGGATAGCACGTGGCCTCGCATATCTTCACCATGCGAGTTCAAAACCTATTGTGCATGGACACCTCGTCACCTCCAACATTTTGCTCACTGATAATTTTGAGCCTCGAATCTCTGATTTTGTACTTCAAATCAACTCAAGTTCCAATGTTGGCACTGAAGATGATGTGTACTGCTTTGGAGTGGTGTTGATGGAGCTACTTACCGGGAGGGTCGGCACAACAAAGACAATTGTTGCAGTTAAAAAGGCAGTGAGGGAGGAACAACACGTTAGAGTGCTTGATCAGAGGTTGCTACTCGAAGGCGACCCAATGGTGAGCGAGATGGTGGAGAGCCTCATAATCGCTTTTTTGTGCACGGCTGAGTCGCCTTCCAAGAGACCAACCATGCAACAAGTTTTGGGATTACTCAAAGATATTCATCCCCATGAACCATCATTCTAA 1851 0.3928 MKPFYTFLILLTLFSSAQSSCKSKDQKLISKAFKSVSGFNSSTFFQTRILTCSESHITKIILPSKNLTGTISWGYLKNMSKLQIIDLSENSLQGHVPSWFWSSFSSLLEVNLSRNKFGGSMNNINTLFSISTIQKLNLSHNRFSNIVQLSSFQNLKILDLSHNNLRTFPLGFQNLTKLQHLDLSSCNLKDSIKPISSLHSLDYLDLSNNNLTGNFPSDFPPLKNLKFLNISNNNFIYNNKTPNQNQNQVIIHRKQTKPKSKKLILALCSTLATLVIAIISIWVILIIHRKRKQCSKKKKWAISLPVMMNTLNTKVEKTGPFEFETESGSTWVADVKEPTSAPVVMFEKPLMNFTFKDLIIATSHFGKESQLGEGRCGPVYWAVLPGEIHVAIKLKHPNLLTLSGYCIAGKKKLVLYEFMANGNLGRWLHELPTGDTNIEDWTDDTWEFQTGVVEASPKKMGWLTRHRIAVGIARGLAYLHHASSKPIVHGHLVTSNILLTDNFEPRISDFVLQINSSSNVGTEDDVYCFGVVLMELLTGRVGTTKTIVAVKKAVREEQHVRVLDQRLLLEGDPMVSEMVESLIIAFLCTAESPSKRPTMQQVLGLLKDIHPHEPSF 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04661 616 SMART LRR_typ_2 152 174 IPR003591 -
Trre8g04661 616 SMART LRR_typ_2 79 102 IPR003591 -
Trre8g04661 616 SMART LRR_typ_2 198 221 IPR003591 -
Trre8g04661 616 Gene3D Transferase(Phosphotransferase) domain 1 515 613 - -
Trre8g04661 616 ProSiteProfiles Leucine-rich repeat profile. 154 176 IPR001611 GO:0005515
Trre8g04661 616 SUPERFAMILY L domain-like 46 238 - -
Trre8g04661 616 ProSiteProfiles Protein kinase domain profile. 321 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04661 616 Gene3D Ribonuclease Inhibitor 125 247 IPR032675 -
Trre8g04661 616 Gene3D Phosphorylase Kinase; domain 1 325 390 - -
Trre8g04661 616 Pfam Protein tyrosine and serine/threonine kinase 387 516 IPR001245 GO:0004672|GO:0006468
Trre8g04661 616 Gene3D Ribonuclease Inhibitor 17 124 IPR032675 -
Trre8g04661 616 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 51 609 - -
Trre8g04661 616 Gene3D Transferase(Phosphotransferase) domain 1 423 514 - -
Trre8g04661 616 Gene3D Phosphorylase Kinase; domain 1 391 422 - -
Trre8g04661 616 Pfam Leucine rich repeat 132 188 IPR001611 GO:0005515
Trre8g04661 616 PRINTS Leucine-rich repeat signature 198 211 - -
Trre8g04661 616 PRINTS Leucine-rich repeat signature 155 168 - -
Trre8g04661 616 ProSiteProfiles Leucine-rich repeat profile. 132 153 IPR001611 GO:0005515
Trre8g04661 616 FunFam Calmodulin-binding receptor kinase CaMRLK 131 239 - -
Trre8g04661 616 SUPERFAMILY Protein kinase-like (PK-like) 355 609 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04661 Trre-Chr8 50338536 50341541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04661 57 609 Receptor kinase-like Gene Family AT5G07280 29.936 7.77e-63 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Trre8g04661 PK_Tyr_Ser-Thr 9.4e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04661 - - gmx:100809704 778.859