Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04656 ATGTCTGATGGAAATGAGAAGAGTGAGGAACATGGTGAGGATTCTTCAATGGGATCTTCACATAAGTGTTCAATATCATTTGATTTGAATGAAGAAGCTAGTAGTGATCATCAAGGTATTATTAACAATGAAGAGAATGATATTGATGAGGCATGTGAGAATGAAGTTGACAATGGTGATGATGATGATGATGATGATGATGAGAAAACAAAGGATGATAATGATAATGATAATGATGAAGGTACTTCAAGTTCAACTAAAAGAAGTAGTGGATCAAATGAAAGAAGAAATGGTGTAAGACAATATGTTAGATCAAAGATGCCTAGACTTAGATGGACTCCTGATCTTCATCACTCCTTTGTTCATGCTGTTGAAAGACTTGGAGGCCAAGAGAGAGCAACACCCAAATTGGTGCTTCAACTGATGAATGTGAGAGGACTAAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTACCGGAGCAAAAAACTTGACGAGGTTGGACAAGTGCTAAGTTCAACACAAAGATCAACACATGAACTAGGTTCCATTTCTCATGTACCCCATCAATATTCCATGATGCCTCATCAACATTTCAAGATGGCAAATGGTGGAATTGTTCTAGAAACTAATTACAACCAAAATAGTTATAATTTCCATAGTCTCCTTCATCCCTCATCCTTGTCACATTCAAAGCCCATCAATTCAAGGCACAATCAATGGTACTTAAACCATCAACCTTTGAGACCAAGCTATGTGAGCAATGAAGTTGTTTCCTCCTCAACAGCCTTACATACGCTACAAGGAAAATCATCGGTAGCTTCGAGCCAACAACTTCAAGTAATGGATACTACGGCGAATACCACACTTGCTCCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAGATGGCCTCCATTAGATATCATGAACAACAATCATCAATATTTGAAGAAAAATTTACATACCATTACCAATGTTTCTACTTTTGGCTCCACTACAACATCACTTAGACCAACTGAAGTGAGCTTTGGAAATAACATAAGATTCAGGGAGCATCTATCAAACATCAATGAGCACCACAATTCTTTTAATAATTCAAAGCTTCAATTTGATCCCCCATTTCGGATTAAGTTGAATGAAGAAACATTGGAGAAAGACAAAAAATGGGTGCCTGATTTGCAACTGAGTTTAAGTCAAACAAATAGCAACAATGATGGCAAGAGTGATCTTGGTTTCAGAGAAACAAAAGAAATCAACACGAAACTCTCACTTTCTTAG 1281 0.3739 MSDGNEKSEEHGEDSSMGSSHKCSISFDLNEEASSDHQGIINNEENDIDEACENEVDNGDDDDDDDDEKTKDDNDNDNDEGTSSSTKRSSGSNERRNGVRQYVRSKMPRLRWTPDLHHSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEVGQVLSSTQRSTHELGSISHVPHQYSMMPHQHFKMANGGIVLETNYNQNSYNFHSLLHPSSLSHSKPINSRHNQWYLNHQPLRPSYVSNEVVSSSTALHTLQGKSSVASSQQLQVMDTTANTTLAPMRPSQFLEEKRWPPLDIMNNNHQYLKKNLHTITNVSTFGSTTTSLRPTEVSFGNNIRFREHLSNINEHHNSFNNSKLQFDPPFRIKLNEETLEKDKKWVPDLQLSLSQTNSNNDGKSDLGFRETKEINTKLSLS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04656 426 MobiDBLite consensus disorder prediction 83 98 - -
Trre8g04656 426 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 85 236 IPR046955 GO:0003700
Trre8g04656 426 MobiDBLite consensus disorder prediction 1 17 - -
Trre8g04656 426 FunFam Myb family transcription factor 106 164 - -
Trre8g04656 426 MobiDBLite consensus disorder prediction 46 74 - -
Trre8g04656 426 MobiDBLite consensus disorder prediction 18 41 - -
Trre8g04656 426 NCBIfam myb-like DNA-binding domain, SHAQKYF class 108 163 IPR006447 GO:0003677
Trre8g04656 426 Gene3D - 107 164 - -
Trre8g04656 426 Pfam Myb-like DNA-binding domain 110 160 IPR001005 -
Trre8g04656 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 104 164 IPR017930 -
Trre8g04656 426 SUPERFAMILY Homeodomain-like 106 162 IPR009057 -
Trre8g04656 426 MobiDBLite consensus disorder prediction 1 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04656 Trre-Chr8 50303267 50306232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04656 97 189 G2-like Transcription Factor Family AT2G42660 61.224 3.46e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre8g04656 Myb_DNA-binding 8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04656 - - mtr:11419043 600.127