Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04655 ATGAAAATGTCTGATGGAAATGAGAAGAGTGAGGAACATGGTGAGGATTCTTCAATGGGATCTTCACATAAGTGTTCAATATCATTTGATTTGAATGAAGAAGCTAGTAGTGATCATCAAGGTATTATTAACAATGAAGAGAATGATATTGATGAGGCATGTGAGAATGAAGTTGACAATGGTGATGATGATGATGATGATGATGATGAGAAAACAAAGGATGATAATGATAATGATAATGATGAAGGTACTTCAAGTTCAACTAAAAGAAGTAGTGGATCAAATGAAAGAAGAAATGGTGTAAGACAATATGTTAGATCAAAGATGCCTAGACTTAGATGGACTCCTGATCTTCATCACTCCTTTGTTCATGCTGTTGAAAGACTTGGAGGCCAAGAGAGAGCAACACCCAAATTGGTGCTTCAACTGATGAATGTGAGAGGACTAAGCATTGCTCATGTCAAGAGTCACTTGCAGGTATATAAAACAAAATTTGAGATGTACCGGAGCAAAAAACTTGACGAGGTTGGACAAGTGCTAAGTTCAACACAAAGATCAACACATGAACTAGGTTCCATTTCTCATGTACCCCATCAATATTCCATGATGCCTCATCAACATTTCAAGATGGCAAATGGTGGAATTGTTCTAGAAACTAATTACAACCAAAATAGTTATAATTTCCATAGTCTCCTTCATCCCTCATCCTTGTCACATTCAAAGCCCATCAATTCAAGGCACAATCAATGGTACTTAAACCATCAACCTTTGAGACCAAGCTATGTGAGCAATGAAGTTGTTTCCTCCTCAACAGCCTTACATACGCTACAAGGAAAATCATCGGTAGCTTCGAGCCAACAACTTCAAGTAATGGATACTACGGCGAATACCACACTTGCTCCCATGAGACCAAGCCAATTTCTTGAAGAGAAAAGATGGCCTCCATTAGATATCATGAACAACAATCATCAATATTTGAAGAAAAATTTACATACCATTACCAATGTTTCTACTTTTGGCTCCACTACAACATCACTTAGACCAACTGAAGTGAGCTTTGGAAATAACATAAGATTCAGGGAGCATCTATCAAACATCAATGAGCACCACAATTCTTTTAATAATTCAAAGCTTCAATTTGATCCCCCATTTCGGATTAAGTTGAATGAAGAAACATTGGAGAAAGACAAAAAATGGGTGCCTGATTTGCAACTGAGTTTAAGTCAAACAAATAGCAACAATGATGGCAAGAGTGATCTTGGTTTCAGAGAAACAAAAGAAATCAACACGAAACTCTCACTTTCTTAG 1308 0.37 MKMSDGNEKSEEHGEDSSMGSSHKCSISFDLNEEASSDHQGIINNEENDIDEACENEVDNGDDDDDDDDEKTKDDNDNDNDEGTSSSTKRSSGSNERRNGVRQYVRSKMPRLRWTPDLHHSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQVYKTKFEMYRSKKLDEVGQVLSSTQRSTHELGSISHVPHQYSMMPHQHFKMANGGIVLETNYNQNSYNFHSLLHPSSLSHSKPINSRHNQWYLNHQPLRPSYVSNEVVSSSTALHTLQGKSSVASSQQLQVMDTTANTTLAPMRPSQFLEEKRWPPLDIMNNNHQYLKKNLHTITNVSTFGSTTTSLRPTEVSFGNNIRFREHLSNINEHHNSFNNSKLQFDPPFRIKLNEETLEKDKKWVPDLQLSLSQTNSNNDGKSDLGFRETKEINTKLSLS 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04655 435 MobiDBLite consensus disorder prediction 85 100 - -
Trre8g04655 435 MobiDBLite consensus disorder prediction 48 76 - -
Trre8g04655 435 MobiDBLite consensus disorder prediction 20 43 - -
Trre8g04655 435 Gene3D - 109 166 - -
Trre8g04655 435 FunFam Myb family transcription factor 108 166 - -
Trre8g04655 435 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 89 239 IPR046955 GO:0003700
Trre8g04655 435 SUPERFAMILY Homeodomain-like 108 165 IPR009057 -
Trre8g04655 435 MobiDBLite consensus disorder prediction 1 105 - -
Trre8g04655 435 Pfam Myb-like DNA-binding domain 112 162 IPR001005 -
Trre8g04655 435 NCBIfam myb-like DNA-binding domain, SHAQKYF class 110 164 IPR006447 GO:0003677
Trre8g04655 435 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 106 166 IPR017930 -
Trre8g04655 435 MobiDBLite consensus disorder prediction 1 19 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04655 Trre-Chr8 50303261 50306232 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04655 99 198 G2-like Transcription Factor Family AT2G42660 57.143 1.46e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre8g04655 Myb_DNA-binding 1.4e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04655 - - mtr:11419043 595.119