Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04652 ATGGAATGTATATGCGATGGATTTGGATTTTGGCTCAGGATTTATGTTGGATTGATTTCTCTTTGCGCTATTCGACAGTGCTGGGCTCTTAATGATGAAGGAATTGCTTTGTTGAAATTTCGAGAAAGAATAACTTCTGATCCTCATGGCGCTCTGGTAAATTGGAATCCAAATGATTCCGACCCTTGCAAGTGGTGGGGTGTTCGTTGTGTTGATGGTAAAGTGCAAATGCTGGACCTAAATGGGCTATCATTGGAAGGGGAATTAACTCCTCATCTTGGGAAACTTGGTCACTTAAAATCTCTTGTGCTATGCAAGAACAATTTTTCTGGTACCATTCCCAAAGAACTTGGAGATTTAGACAATCTGGAGCTGTTGGATTTAAGGGAGAATAACTTAACTGGAAATATCCCATCACAAATTGGCAGGTTGTTGTTGTTAAAACAATTGTTGGTTCATGACAACAAAATTGAAGGCAGCGATTCTCTAGAGCTTGGGAACATGCCTTCTAAACCACTATTTATTGACAACTATTCGTCACCTCTGACAAGTTTATTTCACTGCAAGCATAGAAAATTTGCACACTGCTTGTGGTATAGAGATCTCAAGCAATTGAACAAGGTAGATTCTTTGGCTGTTCCAATTAAAGGAGCACTTAAAAGATACTTTAATGCCATGGCACTGCCATTGTTCAAGCTAGGAAAGGCTGCCTCTGATGGCTATGAAGAGAATTACTGTGCCGACCTTCCTAGTACTGATGAGTCGGAGGTTGACTCAAATTTATCAAGTCTAATCAGTTCTGCACGTCGTAAGTTGCTTGATCAGTCCAGTAACCTTGCAGCTGCATCTTATAGTGGGCCTGCTATACAGATCAGTTATCTTCCTATTACCATAAGTAGTGGATCTTTCCCGGCTGTGCCAGATGCCAATAAGAAACAAAAACAGTCAGCTGCACCGCTAGATTCACCTACTGTTTCTCCACAAGATATTCAAATAAGTCAACTAAATTCAGCTAGTGGTGCTCCAAGTAAACTCTGGAAATATATTATCATTATCTCTGGTGTCGTTTTCTTGGTCCTTTTTATTGTGCTCGTGCTTTGCATCTATCGAAAACGAGCTGCAAAAGTAATAAAGCCCTGGAAGACAGGAATAAGTGGACAATTGCAGAAAGCATTTGTAACAGGGGTCCCGAAGTTGAATCGGTCGGAGTTGGAGACAGCCTGTGAGGATTTCAGCAATATCATTAACAGTTTTGAGAAGTGCACCGTATATAAAGGAACACTGTCCAGTGGAGTTGAGATTGCTGTTGATTCTACTATTGTTACTTCTACCGAGGAGTGGTCAAAGAACATGGAAATGACCTATAGGAGAAAGATTGCTGCTCTATCCCGTGTTAACCATAAGAACTTTACCAATCTTATTGGTTACTGTGACGAAGAAGAACCATTCACAAGGATGATGGTGTTTGAGTATGCTCCAAATGGAAGCTTATTCGAGCATCTACATGTTAAGGAAGTTGAACATCTAGATTGGAGTGCAAGGATGAGGGTTATCATGGGCACAGCTTATTGTCTTCAGTACATGCACCATGATCTGAATCCACCAGTATCTCATTCCAACCTTAATTCAGTTTCTATATTATTAACAGACGATTTTGCTGCTAAGATTTCCGAGATCAGTTTCGGCCGCAATGGATTATCAACCAGCACAACTGGAGACGAATCAAAGAAATCCGAGTTGCCACCCCAACAAGGTCCTGAAACCGATGTCTATAACTTTGGAGTATTGTTACTTGAAATCATTTCTGCGAAACTGCCATACTCTGAAGAACAAGGTCACCTTGTAAACTGGGCCTCTGAGTACTTGAATGATAAGCGAAACATCGGCTGTTTGATCGATCCGACGCTCGAGTCCTTTAAAGACAATGAACTTGATGTGATATGTGAGGTGATAAAAGAATGTATTCAATCTGATCAAAGGTTAAGACCAACAATGAAGGAAATAACTTGCAAATTGAGAGAAGTGCTTTCAATATCGCCCGAGCAAGCAGTCCCGAGACTTTCTCCACTCTGGTGGGCTGAATTGGAGATCTTATCAGTGGAGGCCACTTAA 2112 0.41 MECICDGFGFWLRIYVGLISLCAIRQCWALNDEGIALLKFRERITSDPHGALVNWNPNDSDPCKWWGVRCVDGKVQMLDLNGLSLEGELTPHLGKLGHLKSLVLCKNNFSGTIPKELGDLDNLELLDLRENNLTGNIPSQIGRLLLLKQLLVHDNKIEGSDSLELGNMPSKPLFIDNYSSPLTSLFHCKHRKFAHCLWYRDLKQLNKVDSLAVPIKGALKRYFNAMALPLFKLGKAASDGYEENYCADLPSTDESEVDSNLSSLISSARRKLLDQSSNLAAASYSGPAIQISYLPITISSGSFPAVPDANKKQKQSAAPLDSPTVSPQDIQISQLNSASGAPSKLWKYIIIISGVVFLVLFIVLVLCIYRKRAAKVIKPWKTGISGQLQKAFVTGVPKLNRSELETACEDFSNIINSFEKCTVYKGTLSSGVEIAVDSTIVTSTEEWSKNMEMTYRRKIAALSRVNHKNFTNLIGYCDEEEPFTRMMVFEYAPNGSLFEHLHVKEVEHLDWSARMRVIMGTAYCLQYMHHDLNPPVSHSNLNSVSILLTDDFAAKISEISFGRNGLSTSTTGDESKKSELPPQQGPETDVYNFGVLLLEIISAKLPYSEEQGHLVNWASEYLNDKRNIGCLIDPTLESFKDNELDVICEVIKECIQSDQRLRPTMKEITCKLREVLSISPEQAVPRLSPLWWAELEILSVEAT 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04652 703 MobiDBLite consensus disorder prediction 307 326 - -
Trre8g04652 703 PANTHER PROTEIN MALE DISCOVERER 2 20 701 - -
Trre8g04652 703 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Trre8g04652 703 Gene3D Transferase(Phosphotransferase) domain 1 492 684 - -
Trre8g04652 703 SUPERFAMILY L domain-like 28 170 - -
Trre8g04652 703 FunFam Inactive receptor-like serine/threonine-protein kinase 383 491 - -
Trre8g04652 703 Pfam Protein tyrosine and serine/threonine kinase 421 672 IPR001245 GO:0004672|GO:0006468
Trre8g04652 703 SUPERFAMILY Protein kinase-like (PK-like) 394 670 IPR011009 -
Trre8g04652 703 MobiDBLite consensus disorder prediction 566 582 - -
Trre8g04652 703 Gene3D Phosphorylase Kinase; domain 1 378 491 - -
Trre8g04652 703 MobiDBLite consensus disorder prediction 566 587 - -
Trre8g04652 703 SMART serkin_6 346 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04652 703 Gene3D Ribonuclease Inhibitor 29 213 IPR032675 -
Trre8g04652 703 ProSiteProfiles Protein kinase domain profile. 409 676 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04652 703 FunFam Nuclear pore complex protein NUP107 30 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04652 Trre-Chr8 50270931 50275159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04652 74 675 Receptor kinase-like Gene Family AT5G56040 26.970 4.90e-46 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Trre8g04652 PK_Tyr_Ser-Thr 7.9e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre8g04652 - - gmx:100808098 991.49