Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre8g04651 ATGGCAGTTGTAGCAGCTCCAAAGAAAACAAACTCAATCAACAAAAAAGATAAAGATAATCCAAATCTTCTCTTAGGTCGTTTCGAATTAGGTAAACTCCTTGGCCATGGAACTTTCGCGAAAGTTCATCTTGCTAAGAACATCAAAACAGGTGAATCAGTAGCAATTAAGATCATAAGCAAAGATAAAATCCTCAAAAGTGGTTTAGTTTCACACATCAAACGTGAAATCTCAATTCTCCGTCGTGTTCGACACCCTAACATCGTTCAACTTTTCGAAGTTATGGCTACAAAAACAAAGATCTATTTCGTTATGGAATATGTTCGTGGTGGTGAACTTTTCAATAAAGTTGCTAAAGGTAGGTTAAAAGAAGAAGTTGCAAGAAAATATTTTCAACAATTGATTTGTGCTGTTGGATTTTGTCATGCTAGAGGTGTTTATCATAGAGATTTAAAACCTGAAAATTTGTTACTTGATGAAAATGGTAATCTTAAAGTTTCTGATTTTGGATTAAGTGCTGTTTCGGATGAAATTAAACAAGATGGTTTGTTTCATACTTTTTGTGGTACACCTGCTTATGTTGCTCCTGAGGTTTTGTCTAGGAAAGGTTATGATGGTGCTAAGGTTGATATTTGGTCTTGTGGTGTTGTTTTGTTTGTTTTGATGGCTGGTTATTTACCTTTTCATGATCCTAATAATGTTATGGTTATGTATAAGAAGATTTATAAAGGTGATTTTAGGTGTCCTAGATGGTTTTCGCCTGAGCTTGTTAATCTTCTTACTAGGTTACTTGATATTAAGCCGCATACTAGGATTTCGATTCCGGAGATTATGGAGAATCGTTGGTTTAAGATAGGTTTTAAGAGTATTAAGTTTTATGTTGAGGATGATGTTGTTTGTAATGTTGATTCTCTTGAATTTGATGATGGTGGTGGTGTTGGTGATAATAAGGTAGTGAATTTCGATGATCATGTTGATGAGGTGTTGGAATCGGTATCGGAATCGGAATGGGATCCTGAGGTTTTGAGTAGAAGGAATAACCGTGCTCGTGCTTCGTTGCCTAGGCCTGCAAGTTTGAATGCTTTTGATATTATATCGTTTTCGCAAGGTTTTGATCTTTCTGGTTTGTTTGAGGAAAAGGGTGATGAAGCAAGGTTTGTGTCTAGTGCGTCGGTGCCGAAGATTCTATCGAAGTTGGAGGAAGTTGCTCATTTGGTTAGGTTCAATGTAAGGAAGAAAGATTGCAGGGTTAGCTTGGAGGGTTCTAGAGAAGGGGCAAAAGGGCCGTTGACTATTGCTGCCGAGGTATTTGAATTGACGTCTTCTTTGGTGGTGGTGGAAGTGAAGAAAAAAGGAGGGGATAAGGCGGAATATGAGAAATTTTTAAACACTGAATTGAAGCCGGCTTTGCATAGTTTAATCGTGGAGGAGGAATCTGCAGGTTCTTCAAGTCAAACTACACCAGATGAATCTTTGCAGCAACGTGCATTTTCTGATTCTGCCATTGACAAACATTCAGATAGTATCGAAGCTCTCAACTTAGAAAACTGA 1551 0.3759 MAVVAAPKKTNSINKKDKDNPNLLLGRFELGKLLGHGTFAKVHLAKNIKTGESVAIKIISKDKILKSGLVSHIKREISILRRVRHPNIVQLFEVMATKTKIYFVMEYVRGGELFNKVAKGRLKEEVARKYFQQLICAVGFCHARGVYHRDLKPENLLLDENGNLKVSDFGLSAVSDEIKQDGLFHTFCGTPAYVAPEVLSRKGYDGAKVDIWSCGVVLFVLMAGYLPFHDPNNVMVMYKKIYKGDFRCPRWFSPELVNLLTRLLDIKPHTRISIPEIMENRWFKIGFKSIKFYVEDDVVCNVDSLEFDDGGGVGDNKVVNFDDHVDEVLESVSESEWDPEVLSRRNNRARASLPRPASLNAFDIISFSQGFDLSGLFEEKGDEARFVSSASVPKILSKLEEVAHLVRFNVRKKDCRVSLEGSREGAKGPLTIAAEVFELTSSLVVVEVKKKGGDKAEYEKFLNTELKPALHSLIVEEESAGSSSQTTPDESLQQRAFSDSAIDKHSDSIEALNLEN 516
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre8g04651 516 SMART serkin_6 28 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04651 516 SUPERFAMILY Protein kinase-like (PK-like) 24 284 IPR011009 -
Trre8g04651 516 FunFam Non-specific serine/threonine protein kinase 356 474 - -
Trre8g04651 516 Gene3D Transferase(Phosphotransferase) domain 1 18 309 - -
Trre8g04651 516 FunFam Non-specific serine/threonine protein kinase 19 107 - -
Trre8g04651 516 CDD STKc_SnRK3 27 282 - -
Trre8g04651 516 FunFam Non-specific serine/threonine protein kinase 18 330 - -
Trre8g04651 516 MobiDBLite consensus disorder prediction 500 516 - -
Trre8g04651 516 MobiDBLite consensus disorder prediction 477 516 - -
Trre8g04651 516 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre8g04651 516 Pfam NAF domain 356 412 IPR004041 GO:0007165
Trre8g04651 516 ProSitePatterns Protein kinases ATP-binding region signature. 34 57 IPR017441 GO:0005524
Trre8g04651 516 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 20 466 - -
Trre8g04651 516 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Trre8g04651 516 ProSiteProfiles NAF domain profile. 354 378 IPR018451 GO:0007165
Trre8g04651 516 MobiDBLite consensus disorder prediction 477 499 - -
Trre8g04651 516 Gene3D Kinase associated domain 1, KA1 356 476 - -
Trre8g04651 516 CDD CIPK_C 360 470 - -
Trre8g04651 516 ProSiteProfiles Protein kinase domain profile. 28 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre8g04651 Trre-Chr8 50267051 50268601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre8g04651 16 491 CBL-interacting serine-threonine protein kinases AT4G18700 72.537 0.0 693
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Trre8g04651 Pkinase 7.6e-74 CL0016